G11179


Basic Information

Item Value
gene id G11179
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 17052636 ~ 17053640 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15105
ATTACGGGGATATACGCCTTTCATCTCCAAAGTGTACCGTTACTGAGTTACAGGCAAAAGAGTAAGTTTTTTTAACTTCAGATTCATCTCATAGGAAAAACTGGAGCAGCGCTCTGAGGAGCCCCTCACCCCGCCCTCGCGGCTCAGACCCAAACAAAGGCACTCACCCCATTCAGCAGAGTGAGAGCTTCAATCCGATACCAAACTCGACCTGATACTCCTCTCCAGTCTGTAGAAATCCTCAGGAAAGCGTAAAGAGTGCTCCCAAAAAGCGGCGGATCATCTTATTAATGCCTTCACTAATTAATTCGTATAAACTGAACCGTATGTCaaaattttgaaaagcgcctagatttttttgttgtttttatcatATTCTGACCACTGGGGATccatttcaacatttttaagtatttctaataaaacttCAAAGGCttttaaataacaatacttCATGAAACTGTCTCTACTTTATATCCTGTTTGAGTATAAGGCCTCAAGATTTGTGTGTAAAATTCAGGcggaaaatggcaaaaacaggCCT

Function

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 26-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15105 True 544 lncRNA 0.40 2 17052636 17053640

Neighbor

gene id symbol gene type direction distance location
c1ql1 c1ql1,LOC107729572,LOC103393155 coding downstream 289531 16693422 ~ 16763105 (-)
ccdc43 ccdc43 coding downstream 615511 16428104 ~ 16437125 (-)
fzd2 fzd2,LOC107583044,LOC107729561,LOC107658461,LOC107721960,LOC107564008 coding downstream 644143 16405951 ~ 16408493 (-)
dcaf7 dcaf7,LOC105030232,LOC105898766,LOC100702343 coding downstream 766743 16275677 ~ 16285893 (-)
snrnp70 snrnp70,LOC106583923 coding downstream 1088160 15952844 ~ 15964476 (-)
LOC111194193 NA coding upstream 12756 17066396 ~ 17068055 (-)
LOC103042512 zgc:172282,LOC108433964,LOC107697541,LOC107758157,LOC107749639,LOC107678250,LOC107555640 coding upstream 183734 17237374 ~ 17512950 (-)
LOC111194274 NA coding upstream 1041399 18095039 ~ 18096516 (-)
LOC111194212 NA coding upstream 1172464 18226104 ~ 18229347 (-)
mos mos coding upstream 1183672 18237312 ~ 18238566 (-)
G11162 NA non-coding downstream 163138 16889047 ~ 16889498 (-)
G11157 NA non-coding downstream 187854 16864328 ~ 16864782 (-)
G11155 NA non-coding downstream 209632 16842718 ~ 16843004 (-)
G11152 NA non-coding downstream 212398 16833241 ~ 16840238 (-)
G11153 NA non-coding downstream 212678 16834242 ~ 16839958 (-)
G11238 NA non-coding upstream 239022 17292662 ~ 17298585 (-)
G11249 NA non-coding upstream 442835 17496475 ~ 17501571 (-)
G11256 NA non-coding upstream 478394 17532034 ~ 17532269 (-)
G11258 NA non-coding upstream 526250 17579890 ~ 17580168 (-)
G11276 NA non-coding upstream 576038 17629678 ~ 17630170 (-)
LOC103036671 LOC108427400 other downstream 698802 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 1047917 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 1150203 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 1765901 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 1774199 15272755 ~ 15278437 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 2055073 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 2188116 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 2732341 19785981 ~ 19802323 (-)
G11917 NA other upstream 2944800 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 3921442 20975082 ~ 20975154 (-)

Expression


Co-expression Network