G11494 (rps6kb1b,rps6kb1,LOC108443350,LOC107701421,LOC107597508)


Basic Information

Item Value
gene id G11494
gene name rps6kb1b,rps6kb1,LOC108443350,LOC107701421,LOC107597508
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 18447322 ~ 18459900 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15489
ACATTTGTTCAGCAAGATGCTACATACATTCCCAACTCCAACTTCTTCAGCTACAGTATATTTggatcaaataaacaaaagaaaaacactttaatCATCAATGTTTTTATAAAAGACATCCCTGTGAAACACAAGGAAGGCCAACGGACAGTCATAATACTCCCAAAACCCACTTCAATTTGGGTCAATTGTaggttgatttttttaaattgtctctATTCCAGTCTGTGTGCAGTTTGATTTGGAAGTTGCATAGCTCAGTATGGACAAAAACATGCAGTTTAACTCTCCATTTAATcggaattaattaattattcactGACATGGGGCAATTACATATAAGCACAAAATCACATTGCCTTTAAAAAGTTAGTTTAATATAACGCAAGGCATTAAAGGCACCTTTGATAACAGTGCCATTGAAAGAAAGCAGCAAAAAGGTTAGCAGCATGTTGGAGAACTTTAGTTAAGTTCAGTATTTTCTTtaatactgttatttactaataatttaaacactttattaagacaatttatttaaataaaactcaTTCATTTGGGCAGAAGCGactacagtaatcacactcagaTGCAGAGTAAAACAACCTTACTCAGACCCTTTAGAAGAGGTGGTCAAGGCTGGGGAACCCAACACATTTTGAAGCGTTTTTATGTTGTTGCTAAAAATGCAATCTGGCTTCAATCCCATTTTGAGTACATTTTGAGCTTTATAGGTGTAGTTTAATGCAATGTATCACCCAGATTTTTGCCAGAGCTATGAAAAAATGCTATGTCTGCTACATAGAAATGAAAACTAGTCAAGAaccttctttctgtatttagttTCTTGCTCTTCCTCAGGCATGGCTGACCACTTAGTGGAGCCAGTGGTCACATGGTTTGTTTCAACACATTTTAgacatttcagatttttccctGTGCAAAATGAAACCAAATAGAAAACACTCCCAAGTGAGTACTAACTCACTGATTCAGACAAGGGTAAAATCAGGGTCCTGGTACTCTGTCTGCAGTTGAATTTTGCACTGGAAAAAGGAACTAAATGTGAAGAGTTGTCAAGTTTCTATCACCAGAGGTTTCattcaagtaattaagtaatgCAATACTACAAATAGCATACATCAATTCCTGATATCACAATCACTTCCTGTGTTCAGTTTCTCAGTTCTACTTGCGGTGGGGCTTGCAAATTCCGTTTCAGATTAGTAAAGGAATGAGAATCCTCAAACAGCACACAGAGCGGAAAAGTAGGACTGCTTtaatatactaataaaaaaaaccctctcAATTTAAAGACCCATTCAGTCTGCATCAGAAAATATGTAGCGGTGAGAACACAAATGCCTTTTCATTCAGCACAAATGCAAAGGTAGTTCAGATCctgctgcaaataaaaaaaaaaatgatttaaaagtcaatgtctttcttttttattgaggCTCTTGTGTACTGACCCATCATCTATATAGCACTGTGGGATGTACTTAAATGTTCAAAGAGAATAAAGACATACGCCAGCTTTTTTAACCTTTGCGTGGTGGAATCCCCGCATACTCATAGCTCTTCGTTCAATTAACAATGATTCATTCAGAGACGGAAAGCCATTCCGCTTTCCAAGCAAtactgtaaaaacacaaaagcaacCCACGGAACAGCGTTCCGCAATAGCACTTGATCATCTTGCAGGGAGCACCACGTCATCTACAGTCTGCACATGTAGTGAACAGTGCAATGTCGTATTGGATTTGATTTGTTCATGTGTTTCATATTCCTTTTATGGTACAATCAtgtagtagaaaaaaaaaaaataaacaaagaaaaaaaaaaaaaaagtcattaatcCAAAAAGAAGGCCCGATCCTGCTCATCCGTCTGATATGTGTTATGACAGGAAGTATCTGAGAACAATGTGGTCTGAGGATTTGGGATGTGAGGAACCGTTGTAGTTTCTCAAGCTCAGTGAAGCACACATGCTCGTCAGATTGTGAAGGGCAGTCTACAGTAGTAGGAGGAGGTTGTGTGGTGGTGGGGAATTTCCATGGTTCCCTAGTATTCATATAAAAGAAATGCAGAACGCAAAAGTAAATCTCTAGGTCAAGCTAATGGTCATAGGTTCATACGTAGATGCTCTGGCCTTTTGGACAAGACGGGGTACGTCTGCTGTTTGAAGGGGCCCATCATTGAGCCTGCGGGCTGCCGGATGGGCAGTGGAGCGGTGACTTCGGCGCTGGCTGCAATGTCCATCTGATCCACAGTGGACACCTCCATGGCAAGTTCTGTGGGAGACTGGAGGGAGGAAGCTCCGGGCATGGTAGGGCCTCGTGGCCAGCAGTCCCCAGCAAACTTGACCGGACTCACAGGTGTCCTTGGACTTCCTAAAAAGCGGCGAGGTGATCGAATTTTTGGCTCAAATGAGAACTTCTCCTTAATGTTTTCCAACACAGATGGAGCTACATACGTAAAACCCAGGAAGACCTGATTTGCACTTTCACTGAGAGTGGAGTCATCGGGACTATCGACAGGAGTCTGGCTGGTGAACTTAGAATCAAATTGGCTCACATCCTCTGCAGATTGCAAGAAAGGCTTAAACGGTGGCTCTACTTTACGCGCAAGCAGGTCGTCCCAGTTAATATGCCGGAAGAAGGGATGAGTCTGCACCTCTGTTGCATCTCCAGGTCCCGCTCCAAGCCGAGATGAGGCACTTCTTTTCAGCAGCCTTTTGAGTAGGTCCCTGGCTTCTTGTGTGAGGTAGGGTGGGAGGTTGAGTTTGCATTTAAGAATTTTGTCAATGGTTTTCTTTCGGTTCTCCCCAGTAAACGGTggCGCCCCGGTTAACATGTCATACATAAGGGCTCCAAGACTCCACCAATCCACAGCCCGATTGTGTCCACTTCTCATCAAGATCTCTGGAGccATGTACTCTATAGTGCcacagaaagtgtgtgtgacCGTCCCGTCATGAATAGATTCTTTACACAGTCCGAAATCAGTCAACTTCACATGACCTTGGTTATTGAGCATGATGTTCTCAGGTTTAAGGTCTCTGTAGATGATGCCCTTCTGATGCAGATGGCCGAGGGCCATAGAAATTTCTGCCAAGTAAAAGCAAGCTGTGTCTTCCATGAAAATCCCCTCCCTTTCCAACTGCATAAAAAGCTCACCACCACTAAGGTATTCAAGGATGAGATAAAGCTTGCCGCCAGTCTGAAAGGCATAGATAAGATCTACAATGAAAGGATGCTTCACTTCCTCCAAAATGTTGCGTTCAGCCTTGGTATGGGCTGTATCCTTGGCGTTGCGGACAATCATGGCCTTTTTTAAGACTTTCATTGCAAATATTTTTCCGGACCCTCCACCGGTCACCTTCCGAACttggaaaacCTTTCCATAGCCACCTTTGCCTAAAACTCGCAATAGCTCAAAGCACTCCGGGCGTATGCTCTCTGTGCCTTGGTTTACACTGTCTTCAGATATCTCGATCTTCTCACAGTCATCCATATTGAACTCAAAGCCACTGCACTGATCCATAAAGTCATTGATCTGTGCCTCCTCCAGCTCGTCATCGGAGACATTCTCCTCCGGCTGGTCCAGATCGATGTCGAAAACCCCGGCCATCGTTTATTTCGCTGCGCTGATCCACCGTAACCGAGAGACCGAGAGAGAAGGCTGCGCTTCCCGCCTCATGGACATGAACACACCGTCGCCATGACCGGCTACGGCACGAGCATGCGCACAACGAGCCCAACAGGGGGCGTTATtttactattatacaccagtaTACAGATTTTTAGAACAATAgagcaaaataataaataataaataactaataattaatccGCATGTTCCCCAAACCTAAAAGAAAATTAGTTTAATTATTCAGTAGGTTTTACCATCCAAGTCTTTTAGACCATATACTTTatgta

Function

symbol description
rps6kb1b Predicted to enable ribosomal protein S6 kinase activity. Predicted to be involved in TOR signaling and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation and signal transduction. Predicted to be located in ribosome. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPS6KB1 (ribosomal protein S6 kinase B1).
rps6kb1 Enables protein serine/threonine/tyrosine kinase activity. Involved in several processes, including G1/S transition of mitotic cell cycle; TOR signaling; and negative regulation of insulin receptor signaling pathway. Located in mitochondrion and nucleoplasm.

NR:

description
PREDICTED: ribosomal protein S6 kinase beta-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15489 True 3941 lncRNA 0.54 17 18447322 18459900

Neighbor

gene id symbol gene type direction distance location
tubd1 tubd1,LOC107581164 coding downstream 1522 18439140 ~ 18445800 (-)
itgae NA coding downstream 124708 18297556 ~ 18322614 (-)
cul5 cul5,cul5a,LOC107714978,LOC107582587,LOC107554266 coding downstream 151260 18279158 ~ 18296062 (-)
mrpl28 mrpl28,LOC107659942 coding downstream 173074 18266393 ~ 18274248 (-)
mos mos coding downstream 208756 18237312 ~ 18238566 (-)
LOC103040343 LOC108443348 coding upstream 154297 18614197 ~ 18632647 (-)
pou2af1 NA coding upstream 275501 18735401 ~ 18762753 (-)
LOC103039462 atf5b,LOC103039462,LOC108435284,LOC108278369,LOC107582581,LOC107701416,LOC107713463 coding upstream 373524 18833424 ~ 18838223 (-)
LOC103023129 phldb1,LOC108277892 coding upstream 428119 18888019 ~ 19056737 (-)
LOC103023776 LOC108435289,LOC108278169,LOC107726099,LOC107662779 coding upstream 731956 19191856 ~ 19207348 (-)
G11491 NA non-coding downstream 11728 18435237 ~ 18435594 (-)
G11484 NA non-coding downstream 12756 18414342 ~ 18434566 (-)
G11482 vmp1,LOC107582631,LOC107701424,LOC107554262 non-coding downstream 34429 18394234 ~ 18412893 (-)
G11481 NA non-coding downstream 42729 18387055 ~ 18404593 (-)
G11473 NA non-coding downstream 77982 18367853 ~ 18369340 (-)
G11498 NA non-coding upstream 33110 18493010 ~ 18517558 (-)
G11526 NA non-coding upstream 151175 18611075 ~ 18611735 (-)
G11532 NA non-coding upstream 187979 18647879 ~ 18681060 (-)
LOC107197925 NA non-coding upstream 246740 18706640 ~ 18709557 (-)
G11599 NA non-coding upstream 262610 18722510 ~ 18722767 (-)
LOC103036671 LOC108427400 other downstream 2093488 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 2442603 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 2544889 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 3160587 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 3168885 15272755 ~ 15278437 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 648813 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 781856 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 1326081 19785981 ~ 19802323 (-)
G11917 NA other upstream 1538540 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 2515182 20975082 ~ 20975154 (-)

Expression


Co-expression Network