G11498


Basic Information

Item Value
gene id G11498
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 18493010 ~ 18517558 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15497
ttggacaataaaactgaaacacctggttttagaccacaataatttattgtcccgacagacagttctagTGGAAaaaggagagttgaggtgcacattgaattctgcgtgatttgatcagccgtggttttatgttttttggatacaatctgggttagcactcgaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttggatgtggttggtccttcttggtggtatgctgacattaccctggatactgtggctcttgatgcatcacaaagacttactgtcttggtcacagatgctccagcaagacgtgcaccaacaatttgtcctcttttgaacccataatgttgtgtgcattgcaatatttagagcagaactgtgctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15497 True 393 lncRNA 0.39 2 18493010 18517558

Neighbor

gene id symbol gene type direction distance location
tubd1 tubd1,LOC107581164 coding downstream 47210 18439140 ~ 18445800 (-)
itgae NA coding downstream 170396 18297556 ~ 18322614 (-)
cul5 cul5,cul5a,LOC107714978,LOC107582587,LOC107554266 coding downstream 196948 18279158 ~ 18296062 (-)
mrpl28 mrpl28,LOC107659942 coding downstream 218762 18266393 ~ 18274248 (-)
mos mos coding downstream 254444 18237312 ~ 18238566 (-)
LOC103040343 LOC108443348 coding upstream 96639 18614197 ~ 18632647 (-)
pou2af1 NA coding upstream 217843 18735401 ~ 18762753 (-)
LOC103039462 atf5b,LOC103039462,LOC108435284,LOC108278369,LOC107582581,LOC107701416,LOC107713463 coding upstream 315866 18833424 ~ 18838223 (-)
LOC103023129 phldb1,LOC108277892 coding upstream 370461 18888019 ~ 19056737 (-)
LOC103023776 LOC108435289,LOC108278169,LOC107726099,LOC107662779 coding upstream 674298 19191856 ~ 19207348 (-)
G11494 rps6kb1b,rps6kb1,LOC108443350,LOC107701421,LOC107597508 non-coding downstream 33110 18447322 ~ 18459900 (-)
G11491 NA non-coding downstream 57416 18435237 ~ 18435594 (-)
G11484 NA non-coding downstream 58444 18414342 ~ 18434566 (-)
G11482 vmp1,LOC107582631,LOC107701424,LOC107554262 non-coding downstream 80117 18394234 ~ 18412893 (-)
G11481 NA non-coding downstream 88417 18387055 ~ 18404593 (-)
G11526 NA non-coding upstream 93517 18611075 ~ 18611735 (-)
G11532 NA non-coding upstream 130321 18647879 ~ 18681060 (-)
LOC107197925 NA non-coding upstream 189082 18706640 ~ 18709557 (-)
G11599 NA non-coding upstream 204952 18722510 ~ 18722767 (-)
G11619 NA non-coding upstream 307145 18824703 ~ 18824923 (-)
LOC103036671 LOC108427400 other downstream 2139176 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 2488291 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 2590577 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 3206275 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 3214573 15272755 ~ 15278437 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 591155 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 724198 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 1268423 19785981 ~ 19802323 (-)
G11917 NA other upstream 1480882 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 2457524 20975082 ~ 20975154 (-)

Expression


Co-expression Network