G11605


Basic Information

Item Value
gene id G11605
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 18884146 ~ 18902247 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15642
aaaaaaaaaattaaaaaaaaaaaaaaacatttacagctctggaaaaaataagagaccacttcagtttctgaatcagtttctctgattttgctatttataggtatatgtttgagtaaaataaacattgttgttttatcctataaactacagacaacatttctcccaaattccaaataaaaatattgtcatttagagcatttttttgcagaaaatgagaaatggctgaaataacaaaaaggatgcagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagtttaaagttcagaaatcaatatttggtgcaataaccctgttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctttacactcctggtgcaaaaattcaagcagtgatcaaacatcttcctcttgatttttttcaatttggtaaaataaataaaaacaataatttttaagtggtcccttcttttccagagctgtaaatatgaataaatgcaCATTAggtattcaatttttttattgtaaaaaaagtttaaagtttaaagaagtAAACTAAATATCTAATAAAGCTACGgttgcccaaacttttgcacacAACTGTACAGAACTGGACTGAATCTCACTCGGTTGTACAGAAACACACATTCTCTTTTCAGTACTTCTGttttctcactctcacacactcgctGACACACTACATTGGTATGATGGTACTATTCATGTGGCACTTTGGATGGAGTTTTTTCAGGTTTattaaaaagaacagaaagctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15642 True 815 lncRNA 0.54 2 18884146 18902247

Neighbor

gene id symbol gene type direction distance location
LOC103039462 atf5b,LOC103039462,LOC108435284,LOC108278369,LOC107582581,LOC107701416,LOC107713463 coding downstream 45923 18833424 ~ 18838223 (-)
pou2af1 NA coding downstream 121393 18735401 ~ 18762753 (-)
LOC103040343 LOC108443348 coding downstream 251499 18614197 ~ 18632647 (-)
tubd1 tubd1,LOC107581164 coding downstream 438346 18439140 ~ 18445800 (-)
itgae NA coding downstream 561532 18297556 ~ 18322614 (-)
LOC103023776 LOC108435289,LOC108278169,LOC107726099,LOC107662779 coding upstream 289609 19191856 ~ 19207348 (-)
LOC103041420 NA coding upstream 315125 19217372 ~ 19230909 (-)
LOC103042129 thap12,LOC108278397 coding upstream 331096 19233343 ~ 19237928 (-)
trnap-cgg NA coding upstream 336659 19238906 ~ 19238977 (-)
LOC103042959 LOC108435292 coding upstream 382732 19284979 ~ 19312628 (-)
G11619 NA non-coding downstream 59223 18824703 ~ 18824923 (-)
G11599 NA non-coding downstream 161379 18722510 ~ 18722767 (-)
LOC107197925 NA non-coding downstream 174589 18706640 ~ 18709557 (-)
G11532 NA non-coding downstream 203086 18647879 ~ 18681060 (-)
G11526 NA non-coding downstream 272411 18611075 ~ 18611735 (-)
G11712 NA non-coding upstream 189261 19091508 ~ 19094044 (-)
G11720 NA non-coding upstream 215695 19117942 ~ 19121159 (-)
G11742 NA non-coding upstream 364191 19266438 ~ 19266734 (-)
G11747 NA non-coding upstream 472984 19375231 ~ 19377538 (-)
G11753 NA non-coding upstream 489056 19391303 ~ 19535599 (-)
LOC103036671 LOC108427400 other downstream 2530312 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 2879427 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 2981713 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 3597411 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 3605709 15272755 ~ 15278437 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 206466 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 339509 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 883734 19785981 ~ 19802323 (-)
G11917 NA other upstream 1096193 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 2072835 20975082 ~ 20975154 (-)

Expression


Co-expression Network