Item | Value |
---|---|
gene id | LOC103043893 |
gene name | picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 |
gene type | misc |
species | mexican tetra (Astyanax mexicanus) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_035898.1 |
NCBI id | CM008301.1 |
chromosome length | 34292151 |
location | 19412807 ~ 19444831 (+) |
genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
symbol | description |
---|---|
picalmb | Predicted to enable SNARE binding activity; clathrin heavy chain binding activity; and phosphatidylinositol binding activity. Predicted to be involved in clathrin-dependent endocytosis and synaptic vesicle budding from presynaptic endocytic zone membrane. Predicted to act upstream of or within clathrin coat assembly. Predicted to be active in clathrin-coated pit; clathrin-coated vesicle; and synaptic vesicle. Predicted to be extrinsic component of presynaptic endocytic zone membrane. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human PICALM (phosphatidylinositol binding clathrin assembly protein). |
description |
---|
PREDICTED: phosphatidylinositol-binding clathrin assembly protein-like isoform X1 |
id | name | namespace |
---|---|---|
GO:0048268 | clathrin coat assembly | biological_process |
GO:0030118 | clathrin coat | cellular_component |
GO:0005545 | 1-phosphatidylinositol binding | molecular_function |
GO:0030276 | clathrin binding | molecular_function |
id | description |
---|---|
K20044 | PICALM; phosphatidylinositol-binding clathrin assembly protein |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU15744 | False | 903 | TUCP | 0.32 | 3 | 19412844 | 19424064 |
XM_007260535.3 | True | 3172 | mRNA | 0.48 | 24 | 19412807 | 19444831 |
XM_007260536.3 | False | 3169 | mRNA | 0.48 | 24 | 19412807 | 19444831 |
XM_007260537.3 | False | 3165 | mRNA | 0.48 | 24 | 19412808 | 19444831 |
XM_007260538.3 | False | 3159 | mRNA | 0.48 | 23 | 19412808 | 19444831 |
XM_007260539.3 | False | 3157 | mRNA | 0.48 | 23 | 19412807 | 19444831 |
XM_007260540.3 | False | 3153 | mRNA | 0.48 | 23 | 19412808 | 19444831 |
XM_007260541.3 | False | 3060 | mRNA | 0.48 | 23 | 19412807 | 19444831 |
XM_007260542.3 | False | 3087 | mRNA | 0.48 | 23 | 19412808 | 19444831 |
XM_007260543.3 | False | 3018 | mRNA | 0.48 | 23 | 19412808 | 19444831 |
XM_007260544.3 | False | 2934 | mRNA | 0.48 | 22 | 19412808 | 19444831 |
XM_007260545.3 | False | 2844 | mRNA | 0.48 | 21 | 19412808 | 19444831 |
XM_007260546.3 | False | 2832 | mRNA | 0.48 | 20 | 19412808 | 19444831 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC103040710 | LOC108435288 | coding | upstream | 221218 | 19123270 ~ 19191589 (+) |
LOC103023445 | med13,LOC108435287,LOC107729113,LOC105022380 | coding | upstream | 295628 | 19073615 ~ 19117179 (+) |
LOC107197927 | NA | coding | upstream | 344166 | 19055132 ~ 19068641 (+) |
LOC103038931 | NA | coding | upstream | 599218 | 18793023 ~ 18813589 (+) |
colca2 | NA | coding | upstream | 700544 | 18706505 ~ 18712263 (+) |
LOC103046737 | NA | coding | downstream | 4731 | 19449562 ~ 19489254 (+) |
LOC103047344 | LOC107662768,LOC107597532,LOC107748584,LOC102234316,LOC107713435,LOC105903789 | coding | downstream | 72782 | 19517613 ~ 19535102 (+) |
LOC103047658 | esamb,LOC108435282 | coding | downstream | 236043 | 19680874 ~ 19753953 (+) |
LOC103025032 | LOC108435274 | coding | downstream | 311705 | 19756536 ~ 19762235 (+) |
thyn1 | thyn1,LOC107582572 | coding | downstream | 328907 | 19773738 ~ 19777715 (+) |
G11673 | NA | non-coding | upstream | 52703 | 19359898 ~ 19360104 (+) |
G11668 | NA | non-coding | upstream | 106240 | 19274881 ~ 19306567 (+) |
G11671 | NA | non-coding | upstream | 138066 | 19274120 ~ 19274741 (+) |
G11658 | LOC108435291,LOC107662773,LOC107586271,LOC107726100,LOC107597536 | non-coding | upstream | 166292 | 19236913 ~ 19246515 (+) |
G11638 | NA | non-coding | upstream | 215388 | 19113980 ~ 19197419 (+) |
G11678 | NA | non-coding | downstream | 90844 | 19535675 ~ 19536380 (+) |
G11703 | NA | non-coding | downstream | 222129 | 19666960 ~ 19669244 (+) |
LOC111193550 | NA | non-coding | downstream | 601996 | 20046827 ~ 20063468 (+) |
G11856 | NA | non-coding | downstream | 613705 | 20058536 ~ 20147053 (+) |
G11891 | NA | non-coding | downstream | 1001563 | 20446394 ~ 20488144 (+) |
LOC111194200 | NA | other | upstream | 2269459 | 17139425 ~ 17143348 (+) |
ccdc47 | ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 | other | upstream | 3112140 | 16224721 ~ 16300667 (+) |
ddx42 | ddx42 | other | upstream | 3377523 | 16011694 ~ 16035284 (+) |
G10879 | NA | other | upstream | 3452429 | 15952846 ~ 15960378 (+) |
G10838 | NA | other | upstream | 3643564 | 15758762 ~ 15769243 (+) |
LOC103033739 | gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 | other | downstream | 1518218 | 20963049 ~ 20990064 (+) |
trnan-guu | NA | other | downstream | 1531373 | 20976204 ~ 20976277 (+) |
G12362 | bco2b,LOC108436497,LOC107586303,LOC107657247 | other | downstream | 2015019 | 21459850 ~ 21463649 (+) |
spa17 | spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 | other | downstream | 2856165 | 22300996 ~ 22384972 (+) |
oaf | oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 | other | downstream | 3028821 | 22473652 ~ 22517780 (+) |