G11712


Basic Information

Item Value
gene id G11712
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19091508 ~ 19094044 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15830
GAAATAATGCCATCCAAGCCTCCACATCCACTGCCATCCAACTTCAGCTTGTCCACAGGAAGTGAGGGTGGCTGCAGGTTGGCGTTCTTCTTGCCAGGCAGTCGAAAGTACGTCCAGGGGTTGAGAGTCGCGTCCTCGTTGGGGTTAACTGCAGATCCCACATACACCGTGGGCTCCACAGGGCCTGAAAAAGCTGACTCAGGGCAGCCTAAGGACCCGGGGTTTGCAGAAGAGTCAGCCAGGTTTTTCTGAGGCAACAAGCAGGGCTCAGTGGAGGAGGAAGGGTAGAACTGTTGGTTGACAGGCGTGGAGGAGCGTTTCAGCTCTCCTGCCGTCTCCTCCTCTCGTTCACAGGGATGTGGGCTGAGCGGCGGAGGCTGAGGTGACCCTGCAATGTCTCCAGATGATGCGTGAAGTGTTTGGACTTTGACCATGGCAACATCCACATGGTGGAGACTGGGGTAGTGGCTGTCCTCCTGGCCACGCAAGCCAAGCTTCTGGCCTCCACCCTCTGAATCCAGGCTGAGATCTTCAGGGTTGCGGTGATGGAAGGGAGTCTGAGGTCTTTTTTGCTGCTTTTCGGCTTTCTCCATCTTGTCCACTGCCTTGTACCTGGATGGGGGTTGAGCTGGTTGGCCAGTAGAAGGAGGAAGCCCTGGGGTGCTACCTGTACGCTGTTTCATGTATTTGTGTCTTGAGCAATTGCACTGACTCCTTTGATAATGTTCGACGAAGTTCCAAACGCAATCTTTATCCTTATCCTCCTCACAAACGCCATTGGTCACAGCTGAAAACTTCCTTTTATTCTGAGCTCGATTGATGTTGCATTCCTGCCAAACGGTCTCCATTAACTGACTGGCCAGCTTGCGTGGAACCTTGCCGCCGTGATGACTGGTGCTGTCCACGCTGAAGCCATCAGACACCGCCGAAACTTTCATCCACCTCGGAGCAGGCTGACAGACTTTCTGTGCTTCCTCTGGAGACGTTGGAGGAGTGAGCGTAACTGATGAGATGGCAGGCTCTCTGTGTGTCGTGTGATTGTGATGACCTCCAGAGCCGAGCCCAGTGCAGCTAGAGGAGCTCACTGCAGCCGGGGCTGGGATATCCGACTGAGCCACCAGAACCAAGCAGGCAGGGTACACCATCCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15830 True 1150 lncRNA 0.35 4 19091508 19094044

Neighbor

gene id symbol gene type direction distance location
LOC103023129 phldb1,LOC108277892 coding downstream 34771 18888019 ~ 19056737 (-)
LOC103039462 atf5b,LOC103039462,LOC108435284,LOC108278369,LOC107582581,LOC107701416,LOC107713463 coding downstream 253285 18833424 ~ 18838223 (-)
pou2af1 NA coding downstream 328755 18735401 ~ 18762753 (-)
LOC103040343 LOC108443348 coding downstream 458861 18614197 ~ 18632647 (-)
tubd1 tubd1,LOC107581164 coding downstream 645708 18439140 ~ 18445800 (-)
LOC103023776 LOC108435289,LOC108278169,LOC107726099,LOC107662779 coding upstream 97812 19191856 ~ 19207348 (-)
LOC103041420 NA coding upstream 123328 19217372 ~ 19230909 (-)
LOC103042129 thap12,LOC108278397 coding upstream 139299 19233343 ~ 19237928 (-)
trnap-cgg NA coding upstream 144862 19238906 ~ 19238977 (-)
LOC103042959 LOC108435292 coding upstream 190935 19284979 ~ 19312628 (-)
G11608 NA non-coding downstream 159347 18879117 ~ 18932161 (-)
G11605 NA non-coding downstream 189261 18884146 ~ 18902247 (-)
G11619 NA non-coding downstream 266585 18824703 ~ 18824923 (-)
G11599 NA non-coding downstream 368741 18722510 ~ 18722767 (-)
LOC107197925 NA non-coding downstream 381951 18706640 ~ 18709557 (-)
G11720 NA non-coding upstream 23898 19117942 ~ 19121159 (-)
G11742 NA non-coding upstream 172394 19266438 ~ 19266734 (-)
G11747 NA non-coding upstream 281187 19375231 ~ 19377538 (-)
G11753 NA non-coding upstream 297259 19391303 ~ 19535599 (-)
G11763 NA non-coding upstream 359349 19453393 ~ 19475044 (-)
LOC103036671 LOC108427400 other downstream 2737674 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 3086789 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 3189075 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 3804773 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 3813071 15272755 ~ 15278437 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 14669 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 147712 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 691937 19785981 ~ 19802323 (-)
G11917 NA other upstream 904396 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 1881038 20975082 ~ 20975154 (-)

Expression


Co-expression Network