G11720


Basic Information

Item Value
gene id G11720
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19117942 ~ 19121159 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15840
TGAATCTCTGAATCTCAGAAGCTGTTTTACTCCCTGGAGAGCGTCATGTGAGCCAGTGAGAAACCAGCTAGGCCTTCAACAGCCATATGGGTGCTCTGCGAATCACGTCGAGCCGAGGCTGGCAGGGCCGCGCTGATAACACTCAAAGGGCCATAAGAAGCGTATCGGTTTAAGACATGATGACAGGAAGAGATTCAGTGACTCCTCATAATGGAGAGCAATAATAGAGCTCTGGACACGGTTACATTTCTTCACTGATGCTCCCGCTGCAGCTCTTAACGCATCTCCATCAGATGATGAGTTACTGCAAGCCAGCCGGCAAGAAAGAGCAAGACAATCACTTCCCGGCGTCGTTATTCTCCGAGCGAGATGATGACAGAGCTCGGGGGGGTGTGGGGAGGCTGCAGAATCTATTAGAGTCACACTGAACAAGTGGCTGCTATCTACCTTCATctctgcagcagcagaacaatgACAGCGGACGTGGTTGGGTAGTTACACGGATGATGGGCTGTGCGGATGTGGGATTTTAGCTGCAGTCTGAAGTCTAGGCTTTGGTCTTTGGCAGGACTGTCTAAAACCCTCCTGATCTGTTAAGTCCATTTGTCAGAAATAGTAGTGGTGTTcctgggtcagtttgacctgctgcatgtttaattatcaaaAAGATGTCTAAAAggccaaaacaaaaacaaaaaaatcctaaaaagcagtgtgaatatttcatttctaactccattattaattattttagcaaTATTTAGTGCCATAGTGTTCCTttcctctaacaggtaatgcatAAAtaaggataattcactcgtttttcataaaactttcattcaaactttttaaaaatatttcactacTTGTGTTTGTATATGCCTATGTATatattggttttatttatttttcctttatgctttctctccttttttttgtgGTGAAGTTGAAAGAGTTGGGCTGTGGGATGTAGGTAAATAGGTTTTGAGGTTTTGAGGCATTTTATGCAgattttccgtttttttttttttttttttttaagatggtgtgttttgtgttttattaaatccattcaatttaacccttgtgtggtgttcggatcaaatgatcaaataatactaataaaatattttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15840 True 1138 lncRNA 0.40 2 19117942 19121159

Neighbor

gene id symbol gene type direction distance location
LOC103023129 phldb1,LOC108277892 coding downstream 61205 18888019 ~ 19056737 (-)
LOC103039462 atf5b,LOC103039462,LOC108435284,LOC108278369,LOC107582581,LOC107701416,LOC107713463 coding downstream 279719 18833424 ~ 18838223 (-)
pou2af1 NA coding downstream 355189 18735401 ~ 18762753 (-)
LOC103040343 LOC108443348 coding downstream 485295 18614197 ~ 18632647 (-)
tubd1 tubd1,LOC107581164 coding downstream 672142 18439140 ~ 18445800 (-)
LOC103023776 LOC108435289,LOC108278169,LOC107726099,LOC107662779 coding upstream 70697 19191856 ~ 19207348 (-)
LOC103041420 NA coding upstream 96213 19217372 ~ 19230909 (-)
LOC103042129 thap12,LOC108278397 coding upstream 112184 19233343 ~ 19237928 (-)
trnap-cgg NA coding upstream 117747 19238906 ~ 19238977 (-)
LOC103042959 LOC108435292 coding upstream 163820 19284979 ~ 19312628 (-)
G11712 NA non-coding downstream 23898 19091508 ~ 19094044 (-)
G11608 NA non-coding downstream 185781 18879117 ~ 18932161 (-)
G11605 NA non-coding downstream 215695 18884146 ~ 18902247 (-)
G11619 NA non-coding downstream 293019 18824703 ~ 18824923 (-)
G11599 NA non-coding downstream 395175 18722510 ~ 18722767 (-)
G11742 NA non-coding upstream 145279 19266438 ~ 19266734 (-)
G11747 NA non-coding upstream 254072 19375231 ~ 19377538 (-)
G11753 NA non-coding upstream 270144 19391303 ~ 19535599 (-)
G11763 NA non-coding upstream 332234 19453393 ~ 19475044 (-)
G11784 LOC107582617,LOC107597532,LOC100304827 non-coding upstream 410230 19531389 ~ 19532500 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 6370 19108713 ~ 19111572 (-)
LOC103036671 LOC108427400 other downstream 2764108 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 3113223 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 3215509 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 3831207 15285676 ~ 15286735 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 120597 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 664822 19785981 ~ 19802323 (-)
G11917 NA other upstream 877281 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 1853923 20975082 ~ 20975154 (-)
G12767 NA other upstream 2872648 21993807 ~ 21994751 (-)

Expression


Co-expression Network