G11742


Basic Information

Item Value
gene id G11742
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19266438 ~ 19266734 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15868
tgagtataggacacagcgagagagagagactgaaacataacgcgagagagagagagagagagagagcgagagcgcgcctgtaaatagcgagagagagagactgaaacataatgcgagagagagagagagagagagcgagagcgcgcctgtaaatagcgagagagagagactgaaacataatgcgagagagagagagagagagagagagactgaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15868 True 216 lncRNA 0.48 2 19266438 19266734

Neighbor

gene id symbol gene type direction distance location
trnap-cgg NA coding downstream 27461 19238906 ~ 19238977 (-)
LOC103042129 thap12,LOC108278397 coding downstream 28510 19233343 ~ 19237928 (-)
LOC103041420 NA coding downstream 35529 19217372 ~ 19230909 (-)
LOC103023776 LOC108435289,LOC108278169,LOC107726099,LOC107662779 coding downstream 59090 19191856 ~ 19207348 (-)
LOC103023129 phldb1,LOC108277892 coding downstream 209701 18888019 ~ 19056737 (-)
LOC103042959 LOC108435292 coding upstream 18245 19284979 ~ 19312628 (-)
LOC103024090 NA coding upstream 93051 19359785 ~ 19370144 (-)
LOC111194225 zpld1,LOC108435272,LOC108277641,LOC107699883,LOC103038052,LOC108276676 coding upstream 116330 19383064 ~ 19397085 (-)
LOC103024404 NA coding upstream 225101 19491835 ~ 19505349 (-)
LOC103047043 lim2.3,LOC103047043,LOC108435296,LOC108277938,LOC107748598,LOC107699889,LOC107597599 coding upstream 269676 19536410 ~ 19541417 (-)
G11720 NA non-coding downstream 145279 19117942 ~ 19121159 (-)
G11712 NA non-coding downstream 172394 19091508 ~ 19094044 (-)
G11608 NA non-coding downstream 334277 18879117 ~ 18932161 (-)
G11605 NA non-coding downstream 364191 18884146 ~ 18902247 (-)
G11619 NA non-coding downstream 441515 18824703 ~ 18824923 (-)
G11747 NA non-coding upstream 108497 19375231 ~ 19377538 (-)
G11753 NA non-coding upstream 124569 19391303 ~ 19535599 (-)
G11763 NA non-coding upstream 186659 19453393 ~ 19475044 (-)
G11784 LOC107582617,LOC107597532,LOC100304827 non-coding upstream 264655 19531389 ~ 19532500 (-)
G11786 NA non-coding upstream 275587 19542321 ~ 19542560 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 154866 19108713 ~ 19111572 (-)
LOC103036671 LOC108427400 other downstream 2912604 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 3261719 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 3364005 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 3979703 15285676 ~ 15286735 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 519247 19785981 ~ 19802323 (-)
G11917 NA other upstream 731706 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 1708348 20975082 ~ 20975154 (-)
G12767 NA other upstream 2727073 21993807 ~ 21994751 (-)
LOC111193708 NA other upstream 4272523 23539257 ~ 23553970 (-)

Expression


Co-expression Network