G11801


Basic Information

Item Value
gene id G11801
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19639485 ~ 19669242 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15957
CATCTGCCTGCCTATCTttcaatctgtctgtctttctgcctGTCTATAATTCCAGCTGTCTATCTTTCCATCTGCCTGTCTATCTTTCCACCTGTCTGTAATTCCAACTGTCTATCTTTCCATCTGCCTGCCTATTTttccatctctctgtctttctgcctGTCTATAATTCCAACTGTCTATCTTTCCATCTGCCTGCCTATCTTTCAAACTGTCTATAATTCCAACTGTCTATCTTTCCAACTGCCTGCCTATCTTTCAAACTGTCTGTAATTCCAACTGTCTATCGTTCCATCTGCCTGCCTATCTttcaatctgtctgtctttctgcctGTTTATAATTCCAGCTGTCTATCTTTCCATCTGCCTGTCTATCTTTCCACCTGTCTGTAATTCCAACTGTCTATCTTTCCATCTGCCTGCCTATCTTTCAAACTGTCTATCgttccatctgtctgtctttctgcctGTCTATAATTCCAGCTGTCTATCTTTCCATCTGCCTGCCTATCTTTCCACCTGTCTGTAATTCCAACTGTCTATCGTTCCATCTGCCTGCCTATCTttcaatctgtctgtctttctgcctGTTTATAATTCCAGCTGTCTATCTTTCCATCTGCCTGCCTATCTTTCAATctGTCTATCTTTCTGCCTGTCTATAATTCCAACTGCCTGCCTATCTTTCCACCTGTCTGTAATTCCAACTGTCTATCGTTCCATCTGCCTGCCTATCTttcaatctgtctgtctttctgcctGTCTATAATTCCAACTGTCTATCTTTCCATCTGCCTGTCTATCTTTCCACCTGTCTGTAATTCCAACTGTCTATCTTTCCATCTACCTGCCTATCTttcaatctgtctgtctttctgcctGTCTATAATTCCAGCTGTCTATCTTTCCATCTGCCTGTCTATCTTTCCACCTGTCTGTAATTCCAACTGTCTATCTTTCCATCTGCCTGCCTATCTttcaatctgtctgtctttctgcctGTCTAT
>TU15961
TATCTTTCCATCTGCCTGTCTATCTTTCCACCTGTCTGTAATTCCAACTGTCTATCTTTCCATCTGCCTGCCTATCTTTCCACCTGTCTGTAATTCCAACTGTCTATCGTTCCATCTGCCTGCCTATCTttcaatctgtctgtctttctgcctGTCTATAATTCCAACTGTCTATCTTTCCACCTGTCTGTAATTCCAACTGTCTATCTTTCCATCTGCCTGCCTATCTttcaatctgtctgtctttctgcctGTCTATAATTCCAGCTGTCTATCTTTCCATCTGCCTGTCTATCTTTCCACCTGTCTGTAATTCCAACTGTCTATCTTTCCATCTGCCTGCCTATCTttcaatctgtctgtctttctgcctGTCTAT
>TU15962
TATCTTTCCATCTGCCTGTCTATCTTTCCACCTGTCTGTAATTCCAACTGTCTATCTTTCCATCTGCCTGCCTATCTTTCCACCTGTCTGTAATTCCAACTGTCTATCTTTCCATCTGCCTGCCTATCTttcaatctgtctgtctttctgcctGTCTATAATTCCAACTGTCTATCTTTCCACCTGTCTGTAATTCCAACTGTCTATCTTTCCATCTGCCTGCCTATCTTTCCACCTGTCTGTAATTCCAACTGTCTATCGTTCCATCTGCCTGCCTATCTttcaatctgtctgtctttctgcctGTCTATAATTCCAACTGTCTATCTTTCCATCTGCCTGCCTATCTTTCAATCTGTCTATCTTTCTGCCTGTCTATTATTCCAACTGCCTGCCTATCTTTCCATCCGTCTGTCTTTCTGCCTATCTATAATTCCAACTGTCTATCTTTCCATCTGCCTGacatttgatttgtattttaatGGTCTGTAGTTTGAAATGCTATTTTTCTTTCTACCTGATTCCAAAAttctaactgtctgtctgtatttttCTGCTGAGTTGAGCTGCGTTCCTGTCCGAGTTGATGGTGGAGTGAggtcctgctgctgctggtgatgATTGTCCTGCTCTCCGTATCGACTCCAtcaagatctgcatcttttcttcACCCTTTTTTCTGTCCGGTgtcgaccagaggaggatgggttcctcttttGAAGCCTGGTTTctctcaaggtttcttcctctttggtctgagggagtttttccttgccactgtcaCCTTGTGTTTGCTCAAAAGAGGCTTGGACCCGGATTTctgtaaaacttaaataaaagaaaaaaatataaattaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15957 True 1007 lncRNA 0.48 3 19666960 19669242
TU15961 False 379 lncRNA 0.46 3 19666960 19668513
TU15962 False 870 lncRNA 0.40 4 19639485 19668513

Neighbor

gene id symbol gene type direction distance location
LOC103047043 lim2.3,LOC103047043,LOC108435296,LOC108277938,LOC107748598,LOC107699889,LOC107597599 coding downstream 98068 19536410 ~ 19541417 (-)
LOC103024404 NA coding downstream 134136 19491835 ~ 19505349 (-)
LOC111194225 zpld1,LOC108435272,LOC108277641,LOC107699883,LOC103038052,LOC108276676 coding downstream 242400 19383064 ~ 19397085 (-)
LOC103024090 NA coding downstream 269341 19359785 ~ 19370144 (-)
LOC103042959 LOC108435292 coding downstream 326857 19284979 ~ 19312628 (-)
acad8 acad8,LOC107582571 coding upstream 95130 19764372 ~ 19772616 (-)
vps26b vps26b,LOC103021802,LOC107699898,LOC107748589,LOC107582573,LOC107597524 coding upstream 108615 19777857 ~ 19783640 (-)
LOC103025963 cadm1b,LOC108435304,LOC108277410,LOC107699904,LOC107662762,LOC107713448 coding upstream 398272 20067514 ~ 20439549 (-)
dixdc1 dixdc1 coding upstream 1243352 20912594 ~ 20943980 (-)
LOC103030049 NA coding upstream 1543991 21213233 ~ 21219097 (-)
G11790 NA non-coding downstream 89606 19549678 ~ 19549879 (-)
G11786 NA non-coding downstream 96925 19542321 ~ 19542560 (-)
G11753 NA non-coding downstream 103886 19391303 ~ 19535599 (-)
G11784 LOC107582617,LOC107597532,LOC100304827 non-coding downstream 106985 19531389 ~ 19532500 (-)
G11763 NA non-coding downstream 164441 19453393 ~ 19475044 (-)
G11821 thyn1,LOC107582572 non-coding upstream 104387 19773629 ~ 19777715 (-)
G11938 NA non-coding upstream 551903 20221145 ~ 20222103 (-)
G12018 NA non-coding upstream 844319 20513561 ~ 20513760 (-)
G12115 NA non-coding upstream 1020093 20689335 ~ 20723912 (-)
G12118 NA non-coding upstream 1051400 20720642 ~ 20731920 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 365631 19241756 ~ 19273854 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 527913 19108713 ~ 19111572 (-)
LOC103036671 LOC108427400 other downstream 3285651 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 3634766 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 3737052 15758756 ~ 15902433 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 116739 19785981 ~ 19802323 (-)
G11917 NA other upstream 329198 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 1305840 20975082 ~ 20975154 (-)
G12767 NA other upstream 2324565 21993807 ~ 21994751 (-)
LOC111193708 NA other upstream 3870015 23539257 ~ 23553970 (-)

Expression


Co-expression Network