G11917


Basic Information

Item Value
gene id G11917
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19998440 ~ 20082442 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU16104
taagagcacagttctgctcaaaatattgcaatgcacactataacattatgggtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgtatcaagagccacggtatccagggtaatgtcagcataccaccaagaaggaccgaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacctggattgtatccaaaaaacataaaaccacggctgatcaaatcacgcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaatcaattattgtggtctaaaaccaggagtttcagtttcattgtccaacccctg

Function

GO: NA

KEGG:

id description
ko03420 Nucleotide excision repair

RNA

RNA id representative length rna type GC content exon number start site end site
TU16104 True 418 TUCP 0.41 2 19998440 20082442

Neighbor

gene id symbol gene type direction distance location
vps26b vps26b,LOC103021802,LOC107699898,LOC107748589,LOC107582573,LOC107597524 coding downstream 214800 19777857 ~ 19783640 (-)
acad8 acad8,LOC107582571 coding downstream 225824 19764372 ~ 19772616 (-)
LOC103024723 LOC108435297 coding downstream 357360 19575806 ~ 19641080 (-)
LOC103047043 lim2.3,LOC103047043,LOC108435296,LOC108277938,LOC107748598,LOC107699889,LOC107597599 coding downstream 457023 19536410 ~ 19541417 (-)
LOC103024404 NA coding downstream 493091 19491835 ~ 19505349 (-)
dixdc1 dixdc1 coding upstream 830152 20912594 ~ 20943980 (-)
LOC103030049 NA coding upstream 1130791 21213233 ~ 21219097 (-)
sorl1 sorl1,LOC107717255 coding upstream 1235059 21317501 ~ 21450195 (-)
bco2 LOC108436497 coding upstream 1374689 21457131 ~ 21465432 (-)
sdhd sdhd,LOC107709126,LOC107657257,LOC107670952,LOC107601715,LOC107717284 coding upstream 1391970 21474412 ~ 21482404 (-)
G11821 thyn1,LOC107582572 non-coding downstream 220725 19773629 ~ 19777715 (-)
G11801 NA non-coding downstream 329198 19639485 ~ 19669242 (-)
G11790 NA non-coding downstream 448561 19549678 ~ 19549879 (-)
G11786 NA non-coding downstream 455880 19542321 ~ 19542560 (-)
G11784 LOC107582617,LOC107597532,LOC100304827 non-coding downstream 465940 19531389 ~ 19532500 (-)
G11938 NA non-coding upstream 138703 20221145 ~ 20222103 (-)
G12018 NA non-coding upstream 431119 20513561 ~ 20513760 (-)
G12115 NA non-coding upstream 606893 20689335 ~ 20723912 (-)
G12118 NA non-coding upstream 638200 20720642 ~ 20731920 (-)
G12120 NA non-coding upstream 646201 20728643 ~ 20755287 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 196117 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 724586 19241756 ~ 19273854 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 886868 19108713 ~ 19111572 (-)
LOC103036671 LOC108427400 other downstream 3644606 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 3993721 15979237 ~ 16004719 (-)
trnak-cuu NA other upstream 892640 20975082 ~ 20975154 (-)
G12767 NA other upstream 1911365 21993807 ~ 21994751 (-)
LOC111193708 NA other upstream 3456815 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 3702029 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 3821741 23904183 ~ 23908771 (-)

Expression


Co-expression Network