G12115


Basic Information

Item Value
gene id G12115
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20689335 ~ 20723912 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU16328
CTTCCACAGACATTATAAGGAAAGGACAACAGGGAgacatttatgtaaaaaaaaaaaacaagaatttaatAAATCCAAATAAGCAAAACAATAGTTCTgtttgtgatcataatacatgtCAATCTCTGTAATAACTGCAGCAAGTTCACAGCACAACAGTCTTCAAGTTGCAGATCtaatcaaattatatttttctgatGATGTTACAAAGTCGTTTTTTCCTTTAAGATCATACAATGTACaattttatacagatttttcAGTGAGAAAATTAAgactgttaaaaatatatgtacagaTAAGCAGAATCATATGCAATAAATCCTGTAAACTTTAGAGTTTAGTGTCTCTGCCACTTTCTTTAATtccatacaacacacacacacacacagctcactaCGCCAAATAGAAAAGTTGCATTGTATAACAGttgtatacagtaccagccaaacgtttggacacttCTTCTACTTACAGAATGTAaaatgcttatttttatttatttctcacaTTTTAGAGGTGAAAACAATGTGTTTTCATGAGTTATGCAGGGAgcaaaaaatcttaaattaaattcaaattaatgttaaaagttACCAAATGTCAGATTCTACAGCTCTAGATTGAGTTAAgagagcacttcagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacatttttgttttattctataaactacagacaacatttctcccaaattacaaataaaaatattgtcatttagatcatttattaaaagatgcagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttttaagagttcagaaaccaatatttggtggaataactctggtggtttttaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16328 True 898 lncRNA 0.30 3 20689335 20723912

Neighbor

gene id symbol gene type direction distance location
LOC103025963 cadm1b,LOC108435304,LOC108277410,LOC107699904,LOC107662762,LOC107713448 coding downstream 249786 20067514 ~ 20439549 (-)
vps26b vps26b,LOC103021802,LOC107699898,LOC107748589,LOC107582573,LOC107597524 coding downstream 905695 19777857 ~ 19783640 (-)
acad8 acad8,LOC107582571 coding downstream 916719 19764372 ~ 19772616 (-)
LOC103024723 LOC108435297 coding downstream 1048255 19575806 ~ 19641080 (-)
LOC103047043 lim2.3,LOC103047043,LOC108435296,LOC108277938,LOC107748598,LOC107699889,LOC107597599 coding downstream 1147918 19536410 ~ 19541417 (-)
dixdc1 dixdc1 coding upstream 188682 20912594 ~ 20943980 (-)
LOC103030049 NA coding upstream 489321 21213233 ~ 21219097 (-)
sorl1 sorl1,LOC107717255 coding upstream 593589 21317501 ~ 21450195 (-)
bco2 LOC108436497 coding upstream 733219 21457131 ~ 21465432 (-)
sdhd sdhd,LOC107709126,LOC107657257,LOC107670952,LOC107601715,LOC107717284 coding upstream 750500 21474412 ~ 21482404 (-)
G12018 NA non-coding downstream 175575 20513561 ~ 20513760 (-)
G11938 NA non-coding downstream 467232 20221145 ~ 20222103 (-)
G11821 thyn1,LOC107582572 non-coding downstream 911620 19773629 ~ 19777715 (-)
G11801 NA non-coding downstream 1020093 19639485 ~ 19669242 (-)
G11790 NA non-coding downstream 1139456 19549678 ~ 19549879 (-)
G12120 NA non-coding upstream 4731 20728643 ~ 20755287 (-)
G12131 zbtb16,LOC108435307,LOC105903797,LOC108278332,LOC107748597 non-coding upstream 116294 20840206 ~ 20929217 (-)
G12203 NA non-coding upstream 236866 20960778 ~ 20961759 (-)
LOC111193576 NA non-coding upstream 588760 21312672 ~ 21316705 (-)
G12400 NA non-coding upstream 808568 21532480 ~ 21538280 (-)
G11917 NA other downstream 606893 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 887012 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 1415481 19241756 ~ 19273854 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 1577763 19108713 ~ 19111572 (-)
LOC103036671 LOC108427400 other downstream 4335501 16321578 ~ 16353834 (-)
trnak-cuu NA other upstream 251170 20975082 ~ 20975154 (-)
G12767 NA other upstream 1269895 21993807 ~ 21994751 (-)
LOC111193708 NA other upstream 2815345 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 3060559 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 3180271 23904183 ~ 23908771 (-)

Expression


Co-expression Network