LOC111193576


Basic Information

Item Value
gene id LOC111193576
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21312672 ~ 21316705 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU16594
ttttttttgcagtttttggcAGAAAATGACCCATATTTTGGTTCACACAGAATTTATACAACCTGAGGTGATTTTTACGGTTCGTTTTACAGAAATTAAACAGGATTAAAATTACTGAGGATgtctaataatatataaattacttttttgatACTTTACTCCACCTCCCAATGTAAAACTAATCCTATTCGAACAGGGCTCAAGCCATATAAGAATGACCTGCAGATGCTTCTCTCTATCTTGTCAGAAATTGTTCCCTGGCTTTTGTCAGTTACTGTATTGAGAAGGTCTTCTGGAGAAACAGATAgtacactgtttattttattttaatttttaccgTTGCTTTTTATCgttttgtcttttatttccATCATGTAAGTAATGCTGAAACTGTTAGAAGCATCCCATTTGCTGTTAATGTGTCAGTCTTTTGATGCTCTCAGGgaactgggtgtgtgtgtgtgtgtataaatgtgtgtgtacagcatTAGGGCATGGTACCAGCGTTTTGCAGcctgtgcagtggtgtgtgtgtgtgtgtgtgtttctctctgagGCAGTCATGCAGTACAGTGGCTTTGTGTAAAGCACCAAGGCTTTGTTGTAGCGTCTCGTGCCAAACGGACAGAAAAGTGGAGGAGAGAAAAAGGACAGATCAGCCTTCAGAGACCACGCTGACCGTGCTGAGTAATGGCATTGGACACATTGGCCATGTATTGGTTGGATCCTGCTTGCCTATGGAGGGATTTACAGACATGAATCTTATGAAGAGGAACAGTCCGAGGGGTTTTAAGAACCACttatactaaaata
>XR_002650613.1
aaaaaaaactccttttttttttttttttttttttttgcagtttttggcAGAAAATGACCCATATTTTGGTTCACACAGAATTTATACAACCTGAGGTGATTTTTACGGTTCGTTTTACAGAAATTAAACAGGATTAAAATTACTGAGGATgtctaataatatataaattacttttttgatACTTTACTCCACCTCCCAATGTAAAACTAATCCTATTCGAACAGGGCTCAAGCCATATAAGAATGACCTGCAGATGCTTCTCTCTATCTTGTCAGAAATTGTTCCCTGGCTTTTGTCAGTTACTGTATTGAGAAGGTCTTCTGGAGAAACAGATAgtacactgtttattttattttaatttttaccgTTGCTTTTTATCgttttgtcttttatttccATCATGTAAGTAATGCTGAAACTGTTAGAAGCATCCCATTTGCTGTTAATGTGTCAGTCTTTTGATGCTCTCAGGgaactgggtgtgtgtgtgtgtgtataaatgtgtgtgtacagcatTAGGGCATGGTACCAGCGTTTTGCAGcctgtgcagtggtgtgtgtgtgtgtgtgtgtttctctctgagGCAGTCATGCAGTACAGTGGCTTTGTGTAAAGCACCAAGGCTTTGTTGTAGCGTCTCGTGCCAAACGGACAGAAAAGTGGAGGAGAGAAAAAGGACAGATCAGCCTTCAGAGACCACGCTGACCGTGCTGAGtgTTGGAAGTAATGTGGAAACTGAAGATCACACTGATCGTGAAACCCATCTCCCTCTTCCCTGCATGCAGAAATATCTATTACCCACGCTGCACCAGGTCCAGGCGTTTAGATTAGAGTCAGGTACGACGGTTAAGAATAGACTTTAATTCACTCATATCATAGCGTACCTGAACTAAAACAAAGCTCAGTTATGAGGTCACCTAAACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16594 False 813 lncRNA 0.40 2 21312672 21316677
XR_002650613.1 True 926 lncRNA 0.39 2 21314598 21316705

Neighbor

gene id symbol gene type direction distance location
LOC103030049 NA coding downstream 93575 21213233 ~ 21219097 (-)
dixdc1 dixdc1 coding downstream 368692 20912594 ~ 20943980 (-)
LOC103025963 cadm1b,LOC108435304,LOC108277410,LOC107699904,LOC107662762,LOC107713448 coding downstream 873123 20067514 ~ 20439549 (-)
vps26b vps26b,LOC103021802,LOC107699898,LOC107748589,LOC107582573,LOC107597524 coding downstream 1529032 19777857 ~ 19783640 (-)
acad8 acad8,LOC107582571 coding downstream 1540056 19764372 ~ 19772616 (-)
sorl1 sorl1,LOC107717255 coding upstream 796 21317501 ~ 21450195 (-)
bco2 LOC108436497 coding upstream 140426 21457131 ~ 21465432 (-)
sdhd sdhd,LOC107709126,LOC107657257,LOC107670952,LOC107601715,LOC107717284 coding upstream 157707 21474412 ~ 21482404 (-)
LOC103030984 NA coding upstream 166866 21483571 ~ 21491122 (-)
LOC103030662 LOC108436499 coding upstream 179893 21496598 ~ 21511206 (-)
G12203 NA non-coding downstream 350913 20960778 ~ 20961759 (-)
G12131 zbtb16,LOC108435307,LOC105903797,LOC108278332,LOC107748597 non-coding downstream 383455 20840206 ~ 20929217 (-)
G12120 NA non-coding downstream 557385 20728643 ~ 20755287 (-)
G12118 NA non-coding downstream 580752 20720642 ~ 20731920 (-)
G12115 NA non-coding downstream 588760 20689335 ~ 20723912 (-)
G12400 NA non-coding upstream 215775 21532480 ~ 21538280 (-)
G12405 NA non-coding upstream 253253 21569958 ~ 21570232 (-)
G12397 ppp2r1b,LOC108277698,LOC108436518,LOC104965971,LOC101167061,LOC103378498,LOC108243526 non-coding upstream 258253 21574958 ~ 21578572 (-)
G12396 NA non-coding upstream 264857 21581562 ~ 21599012 (-)
G12739 NA non-coding upstream 368507 21685212 ~ 21688855 (-)
trnak-cuu NA other downstream 337518 20975082 ~ 20975154 (-)
G11917 NA other downstream 1230230 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 1510349 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 2038818 19241756 ~ 19273854 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 2201100 19108713 ~ 19111572 (-)
G12767 NA other upstream 677102 21993807 ~ 21994751 (-)
LOC111193708 NA other upstream 2222552 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 2467766 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 2587478 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 3734255 25050960 ~ 25056101 (-)

Expression


Co-expression Network