G12405


Basic Information

Item Value
gene id G12405
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21569958 ~ 21570232 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU16671
gtaaaattccttatggtaacagggttgagcgcatgttgtgggacacaacttaatagcataaaaattgtaacatgcaatacaatgtagaccaaagaagttgttttcataagtaaaggagatgcagatcaacaatatacaagaggaagtcatttatttagagcttattttaattgttaaatttgccaaaggagttggtcacccaatgtgtgggacaagagaaaacggccattttttgaggtggtccaaaggtattcggtcttttgaataatatctaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16671 True 275 lncRNA 0.51 1 21569958 21570232

Neighbor

gene id symbol gene type direction distance location
LOC103034230 NA coding downstream 39213 21518007 ~ 21530745 (-)
LOC103030662 LOC108436499 coding downstream 58752 21496598 ~ 21511206 (-)
LOC103030984 NA coding downstream 78836 21483571 ~ 21491122 (-)
sdhd sdhd,LOC107709126,LOC107657257,LOC107670952,LOC107601715,LOC107717284 coding downstream 87554 21474412 ~ 21482404 (-)
bco2 LOC108436497 coding downstream 104526 21457131 ~ 21465432 (-)
LOC103031934 sik2,sik2b,LOC108436519,LOC107657230,LOC107717286,LOC107709128,LOC107586235,LOC108277697,LOC107601680 coding upstream 39922 21610154 ~ 21699039 (-)
LOC107197401 NA coding upstream 135981 21706213 ~ 21720284 (-)
LOC103032573 NA coding upstream 177188 21747420 ~ 21752895 (-)
LOC103036974 drd2,LOC107670954,LOC107586233,LOC107709110 coding upstream 414202 21984434 ~ 22058836 (-)
scn3b NA coding upstream 571538 22141770 ~ 22164569 (-)
G12400 NA non-coding downstream 31678 21532480 ~ 21538280 (-)
LOC111193576 NA non-coding downstream 253253 21312672 ~ 21316705 (-)
G12203 NA non-coding downstream 608199 20960778 ~ 20961759 (-)
G12131 zbtb16,LOC108435307,LOC105903797,LOC108278332,LOC107748597 non-coding downstream 640741 20840206 ~ 20929217 (-)
G12120 NA non-coding downstream 814671 20728643 ~ 20755287 (-)
G12397 ppp2r1b,LOC108277698,LOC108436518,LOC104965971,LOC101167061,LOC103378498,LOC108243526 non-coding upstream 4726 21574958 ~ 21578572 (-)
G12396 NA non-coding upstream 11330 21581562 ~ 21599012 (-)
G12739 NA non-coding upstream 114980 21685212 ~ 21688855 (-)
G12740 NA non-coding upstream 124138 21694370 ~ 21694794 (-)
G12736 NA non-coding upstream 134027 21704259 ~ 21705848 (-)
trnak-cuu NA other downstream 594804 20975082 ~ 20975154 (-)
G11917 NA other downstream 1487516 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 1767635 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 2296104 19241756 ~ 19273854 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 2458386 19108713 ~ 19111572 (-)
G12767 NA other upstream 423575 21993807 ~ 21994751 (-)
LOC111193708 NA other upstream 1969025 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 2214239 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 2333951 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 3480728 25050960 ~ 25056101 (-)

Expression


Co-expression Network