G12483


Basic Information

Item Value
gene id G12483
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21937741 ~ 21984852 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU16779
tcctcttacagcgtccacagttaatcctgttggatgtggttggtgcttcttggtggtatgctgacattaccctggataccgtggctcttgatgcatcacaaagacttgctgtcttggtcacagatgctccagcaagacgtgcaccaacaatttgtcctcttttgaacccataatgttgtgtgcattgcaatatttagagcagaactgtgctcttaccctgctaattgaaccttcacactctgctcttactgctgcaatgtgcaattaatgaagattgaacaccaggctgctccaatttagacatgaaacctaaaatcccacactaaaatgatgacaggtgtttcagtttcattgtccaacccctgtatgtgtgtCTTATTTGTTGCCCATTATGACTTAATGATTAGGTTTATAATACATACATCGCTTTATGTACATTCgtctcgctctctttctgtgCTCCACACAGCTTTGGTCCAGCGTCTCTAACGTAGAGTCCCTCAGAGAAGAGCTTTTCCCGGGCTCCTCTCAGCAGTGCAGGATCTTAATGAAAGCTTTGCGGAACTCGATGTTGAAGGTGGTGTAAATGATGGGGTTCACAGCGCTGTTGACGTAACCCAGCCAGGTGAAGGCTGTGTAGAGTTCTGCTGGGACGTTGTAGTAAGTGTTCACTATGTGCGTGATGAAGAACGGCAGCCAGCAAATGATGAAGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16779 True 715 lncRNA 0.44 2 21937741 21984852

Neighbor

gene id symbol gene type direction distance location
LOC111194280 NA coding upstream 6437 21919218 ~ 21931304 (+)
ttc12 NA coding upstream 32346 21844765 ~ 21905395 (+)
LOC111194279 NA coding upstream 110359 21764958 ~ 21827382 (+)
LOC103031614 ppp2r1b,LOC104918016 coding upstream 340389 21574950 ~ 21597352 (+)
nkapd1 LOC103031305 coding upstream 388654 21544356 ~ 21549087 (+)
LOC111194234 NA coding downstream 324500 22309352 ~ 22318452 (+)
LOC103037938 LOC108436505,LOC108278373,LOC107601688,LOC107586299 coding downstream 367517 22352369 ~ 22391001 (+)
LOC103038252 LOC108277474,LOC103353371,LOC107709113,LOC108436507 coding downstream 421527 22406379 ~ 22435434 (+)
LOC103034910 tmem136,LOC108436527,LOC107709136,LOC107586230,LOC107657235,LOC107601721,LOC107696007,LOC107717274 coding downstream 536390 22521242 ~ 22529283 (+)
LOC103038567 LOC108436528 coding downstream 548827 22533679 ~ 22614509 (+)
G12470 NA non-coding upstream 38021 21899470 ~ 21899720 (+)
G12445 NA non-coding upstream 195437 21741857 ~ 21742304 (+)
G12424 NA non-coding upstream 221352 21679840 ~ 21716389 (+)
G12428 NA non-coding upstream 251799 21685357 ~ 21685942 (+)
G12421 NA non-coding upstream 289098 21648352 ~ 21648643 (+)
G12492 NA non-coding downstream 7491 21992343 ~ 21993142 (+)
G12496 NA non-coding downstream 45588 22030440 ~ 22082671 (+)
G12497 NA non-coding downstream 55001 22039853 ~ 22066354 (+)
G12502 NA non-coding downstream 78632 22063484 ~ 22065919 (+)
G12503 NA non-coding downstream 78692 22063544 ~ 22065122 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 474092 21459850 ~ 21463649 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 947677 20963049 ~ 20990064 (+)
trnan-guu NA other upstream 961464 20976204 ~ 20976277 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 2492910 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 4794393 17139425 ~ 17143348 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 316144 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 488800 22473652 ~ 22517780 (+)
G13067 NA other downstream 1869146 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 2715990 24700842 ~ 24722676 (+)
G13237 NA other downstream 2871081 24855933 ~ 24857022 (+)

Expression


Co-expression Network