G12502


Basic Information

Item Value
gene id G12502
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22063484 ~ 22065919 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU16804
cacacacactccaccccacacataccacacacttcacaccccacaccacacactccacaccacacataccccacaccccacacacactccaccccacacataccacacacactctacaacccacacccCACAAACtccacacccaacacactccacaccacacacactctacagccCACACcacaaccagttagcaacaccttagccacACCACACCAcgcactccacacaccacacacgccccacaccacacacgctcaacaccacacacaccccaccaccacacacactctacaacccacaccacaaccagttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaacagcttagcaaccactttagaaatgacagcaactgcctagcaaccacttagtaaccacatggaatacgttagcaactgcctaacaaccacttagcaaccacttagcaaccatagcaacaccttagcaaccacgtggaaaacgttagcaactgcctagcaaccactttaggaatgatagcaactgcctagcaaccacttagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaacaccttagcaaccacccggataccatagcaacaccttagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaacaccttagca
>TU16806
cacacacactccaccccacacataccacacacttcacaccccacaccacacactccacaccacacataccccacaccccacacacactccaccccacacataccacacacactctacaacccacacccCACAAACtccacacccaacacactccacaccacacacactctacagccCACACcacaaccagttagcaacaccttagccacACCACACCAcgcactccacacaccacacacgccccacaccacacacgctcaacaccacacacaccccaccaccacacacactctacaacccacaccacaaccagttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaacagcttagcaaccactttagaaatgacagcaactgcctagcaaccacttagtaaccacatggaatacgttagcaactgcctaacaaccacttagcaaccactttaggaatgatagcaactgcctagcaaccacttagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaacaccttagcaaccacccggataccatagcaacaccttagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaacaccttagca
>TU16809
cacacttcaaaccacacataccacacacactccacatcacacataccccacaccacacactttaaaccacacataccccacaccacacacactccacctcacacataccacacacacactccacaccacacaaaccccacaccacacacactttaaaccacacacactccacagctcacataccccacaccacacactccaccccacacataccacacacttcacaccccacaccacacactccacaccacacataccccacaccacacacactttaaaccacacacacactccacagctcacataccccacaccacacacactcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16804 True 802 lncRNA 0.38 3 22064229 22065919
TU16806 False 685 lncRNA 0.38 4 22064229 22065919
TU16809 False 327 lncRNA 0.48 3 22063484 22064367

Neighbor

gene id symbol gene type direction distance location
ankk1 NA coding upstream 107640 21938389 ~ 21955844 (+)
LOC111194280 NA coding upstream 132180 21919218 ~ 21931304 (+)
ttc12 NA coding upstream 158089 21844765 ~ 21905395 (+)
LOC111194279 NA coding upstream 236102 21764958 ~ 21827382 (+)
LOC103031614 ppp2r1b,LOC104918016 coding upstream 466132 21574950 ~ 21597352 (+)
LOC111194234 NA coding downstream 243433 22309352 ~ 22318452 (+)
LOC103037938 LOC108436505,LOC108278373,LOC107601688,LOC107586299 coding downstream 286450 22352369 ~ 22391001 (+)
LOC103038252 LOC108277474,LOC103353371,LOC107709113,LOC108436507 coding downstream 340460 22406379 ~ 22435434 (+)
LOC103034910 tmem136,LOC108436527,LOC107709136,LOC107586230,LOC107657235,LOC107601721,LOC107696007,LOC107717274 coding downstream 455323 22521242 ~ 22529283 (+)
LOC103038567 LOC108436528 coding downstream 467760 22533679 ~ 22614509 (+)
G12492 NA non-coding upstream 70342 21992343 ~ 21993142 (+)
G12483 NA non-coding upstream 78632 21937741 ~ 21984852 (+)
G12470 NA non-coding upstream 163764 21899470 ~ 21899720 (+)
G12445 NA non-coding upstream 321180 21741857 ~ 21742304 (+)
G12428 NA non-coding upstream 377542 21685357 ~ 21685942 (+)
G12513 NA non-coding downstream 63260 22129179 ~ 22131000 (+)
G12514 NA non-coding downstream 64684 22130603 ~ 22133642 (+)
G12523 NA non-coding downstream 98842 22164761 ~ 22227150 (+)
G12562 NA non-coding downstream 410285 22476204 ~ 22519541 (+)
G12581 NA non-coding downstream 445611 22511530 ~ 22512347 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 599835 21459850 ~ 21463649 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 1073420 20963049 ~ 20990064 (+)
trnan-guu NA other upstream 1087207 20976204 ~ 20976277 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 2618653 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 4920136 17139425 ~ 17143348 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 235077 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 407733 22473652 ~ 22517780 (+)
G13067 NA other downstream 1788079 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 2634923 24700842 ~ 24722676 (+)
G13237 NA other downstream 2790014 24855933 ~ 24857022 (+)

Expression


Co-expression Network