G12523


Basic Information

Item Value
gene id G12523
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22164761 ~ 22227150 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU16840
acaacatttcccccaaattccaaataaaaatattatcatttagagcatttatttacagaaaatgagaaatggctgaaataacaaaaaatgcaaagaaaacaagttcatattcataaagtttaaagcataaacctggtttttaatcacagtttttaattatgtatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaacttcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggtttttaatttggtaaaatcaaa
>TU16841
acaacatttcccccaaattccaaataaaaatattatcatttagagcatttatttacagaaaatgagaaatggctgaaataacaaaaaaaaaagatgcagagctttcagacctcaaataatgcaaagaaaacaagctcatattcataataagttttaagagttcagaaatcaatatttggtggaataaccctgattggtttttaatcacattttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16840 True 335 lncRNA 0.42 2 22164761 22197826
TU16841 False 279 lncRNA 0.44 2 22164761 22227150

Neighbor

gene id symbol gene type direction distance location
ankk1 NA coding upstream 208917 21938389 ~ 21955844 (+)
LOC111194280 NA coding upstream 233457 21919218 ~ 21931304 (+)
ttc12 NA coding upstream 259366 21844765 ~ 21905395 (+)
LOC111194279 NA coding upstream 337379 21764958 ~ 21827382 (+)
LOC103031614 ppp2r1b,LOC104918016 coding upstream 567409 21574950 ~ 21597352 (+)
LOC111194234 NA coding downstream 82202 22309352 ~ 22318452 (+)
LOC103037938 LOC108436505,LOC108278373,LOC107601688,LOC107586299 coding downstream 125219 22352369 ~ 22391001 (+)
LOC103038252 LOC108277474,LOC103353371,LOC107709113,LOC108436507 coding downstream 179229 22406379 ~ 22435434 (+)
LOC103034910 tmem136,LOC108436527,LOC107709136,LOC107586230,LOC107657235,LOC107601721,LOC107696007,LOC107717274 coding downstream 294092 22521242 ~ 22529283 (+)
LOC103038567 LOC108436528 coding downstream 306529 22533679 ~ 22614509 (+)
G12514 NA non-coding upstream 31119 22130603 ~ 22133642 (+)
G12513 NA non-coding upstream 33761 22129179 ~ 22131000 (+)
G12496 NA non-coding upstream 82090 22030440 ~ 22082671 (+)
G12497 NA non-coding upstream 98407 22039853 ~ 22066354 (+)
G12502 NA non-coding upstream 98842 22063484 ~ 22065919 (+)
G12562 NA non-coding downstream 249054 22476204 ~ 22519541 (+)
G12581 NA non-coding downstream 284380 22511530 ~ 22512347 (+)
G12585 NA non-coding downstream 345414 22572564 ~ 22615440 (+)
G12588 NA non-coding downstream 388432 22615582 ~ 22618917 (+)
G12592 NA non-coding downstream 410466 22637616 ~ 22637893 (+)
G12362 bco2b,LOC108436497,LOC107586303,LOC107657247 other upstream 701112 21459850 ~ 21463649 (+)
LOC103033739 gkup,LOC108436512,LOC108278261,LOC106612544,LOC105024033,LOC107709108,LOC107717281,LOC107657260,LOC107586304 other upstream 1174697 20963049 ~ 20990064 (+)
trnan-guu NA other upstream 1188484 20976204 ~ 20976277 (+)
LOC103043893 picalmb,LOC108435293,LOC107726102,LOC107662770,LOC107597534,LOC107729110,LOC107699893,LOC108278317,LOC105903807 other upstream 2719930 19412807 ~ 19444831 (+)
LOC111194200 NA other upstream 5021413 17139425 ~ 17143348 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other downstream 73846 22300996 ~ 22384972 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other downstream 246502 22473652 ~ 22517780 (+)
G13067 NA other downstream 1626848 23853998 ~ 23855353 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other downstream 2473692 24700842 ~ 24722676 (+)
G13237 NA other downstream 2628783 24855933 ~ 24857022 (+)

Expression


Co-expression Network