G12736


Basic Information

Item Value
gene id G12736
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21704259 ~ 21705848 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17100
agaagagctgctttgtgcagtggttggtcagactctaccatcatcaatgctgctgcaagatcttggtgaaaaatgtaattaatgcagcactggattgaataataaataataaatcttgtgacgttgcagaagcttattgaaacaattccACAGTGAATAcagtgtgctgcaatcaaagctaaagaccgTCCATTGAAATATGAGAGTTTTCTTTctccaggcagtgtatttataaGTGACTGCGAAAAAGAAACTGTTTACTTTTTATGCTATCTAGTTGGCGTAGTTTGAatacaacactaaatgaaccactgtttAATACTAGTCTTTACATCTatactattaattaaaaatcaatactgtgttttgaACTAAGTAttgtgatatttcagTATATCAGTATTTTCTTACAACCCTACTTAACATGTAAGTGACATTTTTACTATCTGCTTAAAGCAATCAGTTGCTATGTTTGCatccattttttaaatgaaatacaatccagaatttgtttttacattattcTTTTACAATATCCCTGATGCGTTGGCTCTGTGAATTCGGTATACATGGTTTTAGGTATACTGATTTTAGGTTCTTCTGAAATCTGTTGTTTTCAttggttcattttttaaatgatgctcATCACTTATCACATTACCATAAATCTGAGTTTACAGTAACTCCAGTCCAGTGAAAGTGTAGCATTATCAGGCATTTACTGGTGAAAAAATTTGgagttcttgtgtgtgaaaacaaaccagagataATAAGCTCCTCCCAAACAAGCCTAGAATTGGACACGTTTATCACATTTTTCAGTGTGACAGTATGAAAAGCCCATTAAGTGAAAATATATCTCTgaatcaaatcaataaaatgctaTATTGATGAGCCCAATAATACTAAAAGACAACTAGTCTGGTCGTGTAACATCAATGACAtataaaaaccttgtatctctattttagctgtttttgatttttgtatataaagctctgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17100 True 1002 lncRNA 0.39 2 21704259 21705848

Neighbor

gene id symbol gene type direction distance location
LOC103031934 sik2,sik2b,LOC108436519,LOC107657230,LOC107717286,LOC107709128,LOC107586235,LOC108277697,LOC107601680 coding downstream 5220 21610154 ~ 21699039 (-)
LOC103034230 NA coding downstream 173514 21518007 ~ 21530745 (-)
LOC103030662 LOC108436499 coding downstream 193053 21496598 ~ 21511206 (-)
LOC103030984 NA coding downstream 213137 21483571 ~ 21491122 (-)
sdhd sdhd,LOC107709126,LOC107657257,LOC107670952,LOC107601715,LOC107717284 coding downstream 221855 21474412 ~ 21482404 (-)
LOC107197401 NA coding upstream 365 21706213 ~ 21720284 (-)
LOC103032573 NA coding upstream 41572 21747420 ~ 21752895 (-)
LOC103036974 drd2,LOC107670954,LOC107586233,LOC107709110 coding upstream 278586 21984434 ~ 22058836 (-)
scn3b NA coding upstream 435922 22141770 ~ 22164569 (-)
LOC103032877 NA coding upstream 473568 22179416 ~ 22191537 (-)
G12740 NA non-coding downstream 9465 21694370 ~ 21694794 (-)
G12739 NA non-coding downstream 15404 21685212 ~ 21688855 (-)
G12396 NA non-coding downstream 105247 21581562 ~ 21599012 (-)
G12397 ppp2r1b,LOC108277698,LOC108436518,LOC104965971,LOC101167061,LOC103378498,LOC108243526 non-coding downstream 125687 21574958 ~ 21578572 (-)
G12405 NA non-coding downstream 134027 21569958 ~ 21570232 (-)
G12746 NA non-coding upstream 48823 21754671 ~ 21755463 (-)
G12749 NA non-coding upstream 92121 21797969 ~ 21852060 (-)
G12768 NA non-coding upstream 231937 21937785 ~ 21967799 (-)
G12769 NA non-coding upstream 271493 21977341 ~ 21982608 (-)
G12782 NA non-coding upstream 284873 21990721 ~ 21991991 (-)
trnak-cuu NA other downstream 729105 20975082 ~ 20975154 (-)
G11917 NA other downstream 1621817 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 1901936 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 2430405 19241756 ~ 19273854 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 2592687 19108713 ~ 19111572 (-)
G12767 NA other upstream 287959 21993807 ~ 21994751 (-)
LOC111193708 NA other upstream 1833409 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 2078623 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 2198335 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 3345112 25050960 ~ 25056101 (-)

Expression


Co-expression Network