G12739


Basic Information

Item Value
gene id G12739
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21685212 ~ 21688855 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17103
TCTTCCATTCGGGCCGTATGGGTCAATTAGTCATTTCCTCTCGGGCCACGCAAACAGAGGGCCGCTCGGCAGGCTCCCGCTGCCTCATCTCAAACCCCAGCTTCCCTCAGTCCCCATCTGCCTGGACCCAGGgtctacacactatacacacacacacactcacattcacacactttacacacactgtCAATATTTGTCTGTGGCTCAGAACCCACGTCATGTATTTACAGCATTACCCAGTAATTAGCATTTTTTAGCTGTGTCTCACTGGACCATAAAACGTACAAAGGTTACACACAAAGGGGACAGGCCGCTTAGGACTGGTCAAAAGGCATGTTTGTCTTTTTCCCTttgcttctctttttctctaaccgtgtgtgtgtatataagagtgtgtgtgtgtgtgtgtgccgctACATGTTTAATTGCTGTGTGATGACAGTTTCACAGCAGCGAGGCCGGTCGTTTAGGACCGAGCGACGGAACACCAGCGGTTTGTCACGTCGGCCCCTAGCAGGACGGTTGCGCCGCGCAACACGAACATTTGCATGAGATGATTCTAGTTATTTCCAGTCATTTGCATACTTGGCAGCTGATTTGGAGCAGAAGTACTTTGTGGTCAGTGTGTTATGAACATTTCCTGAGCTCATGGCTTCCATCTAGGCAAGTTTCTGGAAAGGAAAACACAGCTTAAGAACATGATTCATGTGCTGGACCGGCCGCTGACTTTAATAGTCAACAGcgtattgtctttaaaaggcaATGAGAAGAAGAAATCTGTAAAATCAGTGCGAGTGAGGGACAGTGTGAGTCAGCGAGAGACCGTGCAATTGGaagcgagagacagtgtgagtgagaaggagagacagagagcgtgagagggagagacagagcgagagtgtgcgagtgagagaaagacagtgggagttagtgagagacagagcgaataaaagagagcaagagacagcgtgagtgatGGAGAGCAAGAGACGGCACAATTTAgcgagagagcatgagagagagagcgagaaaaagggagagacagagtgatCTAGAGAAAGACAGCACGAGTTAGCGACAGACAGAGCGAGTTAGACAGTAGATAGACAGCGCGAGAGTGATTAGCACAGCGGCAGTGTGTCGACTATTTGAATGATCACCGTGATCATGCTCACCACGTTTCTGTGCACGCTCTGCACTTGTGTGCATCAGTGCACGTTTCGTGCGCAGTATCGAAAACAGGCACCGAAATGTTTTAGTCCTTTCAGTACTCtgcagtaggggtgggtgatatgataatatcacgatatttcagggtatttttgcgataacgatatacttggcgatataggaaaactaaaataattcattcatttcaggaatatagtataagagtataacagtataatcataatgtggcaaaataaataatatagcataaaataatataatgcagcaaaaaatattgcagaatatttagtgcatgcatataaactgcaaactaaaacaattatacaataaatacacctaaagcttcacagtgaataatagactacttttaagacagaacagccctattatcacgatatggatttttaatatcatgatatttctgtgtcacgatatattgtatacgatataatattgcccacccctactctacAGTACGAATTTTGATACCCAGCCCTGCGCATGCATAGATACACTTAAATACCAATTCGCAGATTTATATTAGACCGTTTGTGTGCAGTTCAGACTATCCAGTtaacctgatctccatgttttttggaCGTTGGGAGGAAAGCTACATGAACTTAAACTCTGCACCCATAGAGGGATTTGAACTCAAGACTTTAGACAAATAATGATTAATCACAATCATTTGTATGACTGTTAATTGCTGACTAAAGTGTAATGATGGTGAAAGCTCTAACAAGCCCCTCTCAGTTTAAATAAAGCAGATGCGCTGAGTGAAGCCGGACCGGCCGCCTGCATGAATGACCGCAGTAGTGTTTTCTGTGGGTCTGGCTGTGTGTATCAGTTTTAGAATAGGTCCTCGCTCCTGCCTGcgtttattcagctctattcatcTCTTTGTTTCCTTTGGCTAATTTTGGAGTCCTCCCACACATCGCTGGCTCTGTCGTGGCTTTATGAATCGAGCTCACGATCCAGAAAAGCAACAGTGAGCCGGTCTGATTCACGGCTGCACCATTGTGCCGGTGGCTAAATGAGACGTACGAGGGGACGGGGACagggacagcagcagcagcaggcccTGTACTGTTTGTCCGTTTCGAACACGGACCCGTTGTTCTGTCCGGTACGAGAGCCTGCTGTCCACTCGCCATGTGGTTTCTTCGTCTTTGTCATCCTACTGAATCATATAGAGTGTTGTGGGAGGCACCCTGGGCTTGATGCAGCCTTATACACCAATCTCCGATTTCAATTTCAAATCGGAGACATATCCATGTGCTAAAAGATAGAGCCCAAAAGATCTAGCCTGACCCGGCCcaagcccgtgcacattctgcccaaacCCGACCCGAACCGCCCagatttaaacaaaacatttttttagagcaggggtgtccaaactacggcctgcgggccatttgcagcccgtttcctgttttggaggtattttagaaatagaatgaaagttggcccgctgttaagcatttctagctcagaaaaacggagcaaaattgtctgaaagcggagagagtgcgcatttctagcgcagaaaaaagagcaaaagagtctaaaagaggagaggttgtgcatttctagcgcagaaaaacgtgccaaaagagtctaaaagaggagagagtgcgcatttctagcacagaaaaacgggccaaagagtctgataAAAGTTGGCGTAATTAAAGAGTTTAATATTAGGAGACATCATGAaaataaacatcaatttgaaaaatcttagtttacacaacactgtcaaagataaagatagtaagtcaagtaaaatggtgtgtaaatgaaataatcaggaaaaaagtgttatttaatgtgatatatttcattatttgttttattacagcgtgtggcctgtgacttcaaatatatttctccttcattatttaataaaaagctgtttattaagaacagatctctcTGTCTACgcaaatatataattaacaatgttcaAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17103 True 3175 lncRNA 0.32 2 21685212 21688855

Neighbor

gene id symbol gene type direction distance location
LOC103034230 NA coding downstream 154467 21518007 ~ 21530745 (-)
LOC103030662 LOC108436499 coding downstream 174006 21496598 ~ 21511206 (-)
LOC103030984 NA coding downstream 194090 21483571 ~ 21491122 (-)
sdhd sdhd,LOC107709126,LOC107657257,LOC107670952,LOC107601715,LOC107717284 coding downstream 202808 21474412 ~ 21482404 (-)
bco2 LOC108436497 coding downstream 219780 21457131 ~ 21465432 (-)
LOC107197401 NA coding upstream 17358 21706213 ~ 21720284 (-)
LOC103032573 NA coding upstream 58565 21747420 ~ 21752895 (-)
LOC103036974 drd2,LOC107670954,LOC107586233,LOC107709110 coding upstream 295579 21984434 ~ 22058836 (-)
scn3b NA coding upstream 452915 22141770 ~ 22164569 (-)
LOC103032877 NA coding upstream 490561 22179416 ~ 22191537 (-)
G12396 NA non-coding downstream 86200 21581562 ~ 21599012 (-)
G12397 ppp2r1b,LOC108277698,LOC108436518,LOC104965971,LOC101167061,LOC103378498,LOC108243526 non-coding downstream 106640 21574958 ~ 21578572 (-)
G12405 NA non-coding downstream 114980 21569958 ~ 21570232 (-)
G12400 NA non-coding downstream 146932 21532480 ~ 21538280 (-)
LOC111193576 NA non-coding downstream 368507 21312672 ~ 21316705 (-)
G12740 NA non-coding upstream 5515 21694370 ~ 21694794 (-)
G12736 NA non-coding upstream 15404 21704259 ~ 21705848 (-)
G12746 NA non-coding upstream 65816 21754671 ~ 21755463 (-)
G12749 NA non-coding upstream 109114 21797969 ~ 21852060 (-)
G12768 NA non-coding upstream 248930 21937785 ~ 21967799 (-)
trnak-cuu NA other downstream 710058 20975082 ~ 20975154 (-)
G11917 NA other downstream 1602770 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 1882889 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 2411358 19241756 ~ 19273854 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 2573640 19108713 ~ 19111572 (-)
G12767 NA other upstream 304952 21993807 ~ 21994751 (-)
LOC111193708 NA other upstream 1850402 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 2095616 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 2215328 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 3362105 25050960 ~ 25056101 (-)

Expression


Co-expression Network