G12769


Basic Information

Item Value
gene id G12769
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21977341 ~ 21982608 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17147
ggaggagaacatgatgccaagatgcatgaaaaaactgtgattaaaaaacaccagggttattctatcaaatattgatttctcaactcttaaaactttatgaatatgaacttgtttttttttcttttgcattatttgaggtctgaaagctctgcatcttttttgttatatgagccatttctcatttttgttattttctgtaaataaatgctctaaattagaatatttttattaggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctataaatagcaaaatcagagaaactgattcagaaactgaagtgctctcttcatatttttccagagctgtttatggtaAATTCAGTAGAGGGACAGCAGAAGGTGTGGCCAGTGGCCCATTTAATGAGGGTTAAAATCACTGTTCCATTTTACAAACTCCTACAAACCAAACTGCAGAAAAATGCAGATTCAAGAGGATCTGTTTCCATCTACATTATTatcatgtctttatttttttgtgatttagatttttttagctatatattttatagagattttgcACTGAATAGATGGATAGAAAGTAATATCATGTAATATCATGCCTGTATATTTTGTTACCAACTTTTAGAGCTTTTTTATTCCCATTATGAAAAATTTTAAGTCTGTAGTTTTGTCTGGATTGgccattttttgtaaaaaactaaatcagtggaattctctctcctcttttaatAAAGATAAATGAATGGATGATTGCTAAACTCGACAGTattgctaattttttttttatttttactcaagcAATCAgatgaaagtaaagtaaatttcGATCATAATGCAGTTTTCATGCCGGTGTTAACATACAGCAGTGTAATGCTTAATAAgaatgaatgttttattttttaagctgCAAAACAAATGTGCTGAAgcttaaaaaaatgcagattattatttatatacactCACCCGCCACTTTACTAGATACAGCTGTCCAACTGTTTGTTAAAGCAAATGttgaatcagccaatcacatggcagcaactcaatgcatttaggcatgtagaagatctgctgcagttcaaaccgAGCATCAGAGAGAGACGTGACTCGGACTCttgaccaaagacttgagacttgactcagactcgtgACTAAAGACTTAAGACTTAACTCAGACTTGTgatcaaagacttgagacttgactcggactcgtgaccaaagacttgaaacttgacTGGGACTCGTgatcaaagacttgagacttgactcagactcatgaccaaagacttgagacttgactcgggctcgtgaccaaagacttgagacttgactcggactcgtgaccaaagacttgtgacttgacccAGACTTGTgatcaaagacttgagacttgactcagacttgtgatcaaagacttgagacttgactcagactcatgactaaagacttgagacttgactctgactcgtgaccaaagacttgagacttgactcggactcgtgaccaaagacttgtgacttgacccAGACTTGTgatcaaagacttgagacttgactcagacttgtgatcaaagacttgagacttgactcagactcgtgACTAAAGACTTAAGACTTAACTCAGACTTGTgatcaaagacttgagacttgactctgactcgtgaccaaagacttgagacttgactcggactcgtgaccaaagacttggAACTTGACTGGGACTCGTgatcaaagacttgagacttgactcagattcgtggccaaagacttgagacttgactcggactcgtgaccaaagacttgaaacttgacTGGGACTCGTgatcaaagacttgagacttgactcagactcatgaccaaagacttgagacttcaCTCAGACTcatgaccaaagacttgagacttgactcgggctcgtgaccaaagacttgtgacttgacccAGACTTGTgatcaaagacttgagacttgactcagactcatgACTAAAGACTTGTGAACATCTCTGCCGTGTCATATCTGAGAATCTCTGAGGAACGTTTCCAGTAGCTTGTTGAATCGATGCCACGaaggattaaggcagttctgaaggTAAAAGAGCCCAGGTTCAACCTGATACTAGCAAGTACtagtgtacctaataaagtggccggtgagtgtATATCCCTGTTTGGTTGCATTGTTCAAATCAAAATCTAATTACAGGAATCCTCCACACACAATCGTTTTAATGAAGTGAACGGCAGCACTGTTTAAAAGCAATAGTGCGAATTCCAGCAAACTGCTGATTGTCATATCTGTAGTACAGCTGATCATTCTGTCTCGAGCATCACGGTGGAGATTAAGGTGTTTAATGCTTGGAAGAAGCCAAGAGAAGTGATGTAAAGACCACTGGAGCTTTTCATCAACCGagtctgcaaaaaaaacaaaccagccACGCAGTTCTAACTTAACATTTGCTTTCTTAAGCCTTTCatgcttttttattgatttattcatttagtttAAATACGGCATCTGTTGAATGTGTTAAGCCTGCTGTGATGACGTAGCGCATGTTATGTTCTCATGAAGCTGTATGTTGCACTTTGACAGAAGCTGATCAAATTAAtctgtaaaatctgtaaaagaTAAATCATGTAATCATggaataaattatataatatgaagaaaaaataaaaaaaaaaaaaaaaaaa
>TU17149
ggaggagaacatgatgccaagatgcatgaaaaaactgtgattaaaaaacaccagggttattctatcaaatattgatttctcaactcttaaaactttatgaatatgaacttgtttttttttcttttgcattatttgaggtctgaaagctctgcatcttttttgttatatgagccatttctcatttttgttattttctgtaaataaatgctctaaattagaatatttttattaggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctataaatagcaaaatcagagaaactgattcagaaactgaagtgctctcttcatatttttccagagctgtttatggtaAATTCAGTAGAGGGACAGCAGAAGGTGTGGCCAGTGGCCCATTTAATGAGGGTTAAAATCACTGTTCCATTTTACAAACTCCTACAAACCAAACTGCAGAAAAATGCAGATTCAAGAGGATCTGTTTCCATCTACATTATTatcatgtctttatttttttgtgatttagatttttttagctatatattttatagagattttgcACTGAATAGATGGATAGAAAGTAATATCATGTAATATCATGCCTGTATATTTTGTTACCAACTTTTAGAGCTTTTTTATTCCCATTATGAAAAATTTTAAGTCTGTAGTTTTGTCTGGATTGgccattttttgtaaaaaactaaatcagtggaattctctctcctcttttaatAAAGATAAATGAATGGATGATTGCTAAACTCGACAGTattgctaattttttttttatttttactcaagcAATCAgatgaaagtaaagtaaatttcGATCATAATGCAGTTTTCATGCCGGTGTTAACATACAGCAGTGTAATGCTTAATAAgaatgaatgttttattttttaagctgCAAAACAAATGTGCTGAAgcttaaaaaaatgcagattattatttatatacactCACCCGCCACTTTACTAGATACAGCTGTCCAACTGTTTGTTAAAGCAAATGttgaatcagccaatcacatggcagcaactcaatgcatttaggcatgtagaagatctgctgcagttcaaaccgAGCATCAGAGAGAGACGTGACTCGGACTCttgaccaaagacttgagacttgactcagactcgtgACTAAAGACTTAAGACTTAACTCAGACTTGTgatcaaagacttgagacttgactcggactcgtgaccaaagacttgaaacttgacTGGGACTCGTgatcaaagacttgagacttgactcagactcgtgaccaaagacttgaaacttgacTGGGACTCGTgatcaaagacttgagacttCACTCAGACTcatgaccaaagacttgagacttcaCTCAGACTcatgaccaaagacttgagacttgactcgggctcgtgaccaaagacttgtgacttgacccAGACTTGTgatcaaagacttgagacttgactcagactcatgACTAAAGACTTGTGAACATCTCTGCCGTGTCATATCTGAGAATCTCTGAGGAACGTTTCCAGTAGCTTGTTGAATCGATGCCACGaaggattaaggcagttctgaaggTAAAAGAGCCCAGGTTCAACCTGATACTAGCAAGTACtagtgtacctaataaagtggccggtgagtgtATATCCCTGTTTGGTTGCATTGTTCAAATCAAAATCTAATTACAGGAATCCTCCACACACAATCGTTTTAATGAAGTGAACGGCAGCACTGTTTAAAAGCAATAGTGCGAATTCCAGCAAACTGCTGATTGTCATATCTGTAGTACAGCTGATCATTCTGTCTCGAGCATCACGGTGGAGATTAAGGTGTTTAATGCTTGGAAGAAGCCAAGAGAAGTGATGTAAAGACCACTGGAGCTTTTCATCAACCGagtctgcaaaaaaaacaaaccagccACGCAGTTCTAACTTAACATTTGCTTTCTTAAGCCTTTCatgcttttttattgatttattcatttagtttAAATACGGCATCTGTTGAATGTGTTAAGCCTGCTGTGATGACGTAGCGCATGTTATGTTCTCATGAAGCTGTATGTTGCACTTTGACAGAAGCTGATCAAATTAAtctgtaaaatctgtaaaagaTAAATCATGTAATCATggaataaattatataatatgaagaaaaaatgaCTGCATATCATCATTTGGTTCTATGGTGAACTGTTTGTTCATCACACTAATGCCTGGCCCACACTACAGGATTAAATGTTTGTTACAGGGTTTAATCTTTGTTA
>TU17150
ggaggagaacatgatgccaagatgcatgaaaaaactgtgattaaaaaacaccagggttattctatcaaatattgatttctcaactcttaaaactttatgaatatgaacttgtttttttttcttttgcattatttgaggtctgaaagctctgcatcttttttgttatatgagccatttctcatttttgttattttctgtaaataaatgctctaaattagaatatttttattaggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctataaatagcaaaatcagagaaactgattcagaaactgaagtgctctcttcatatttttccagagctgtttatggtaAATTCAGTAGAGGGACAGCAGAAGGTGTGGCCAGTGGCCCATTTAATGAGGGTTAAAATCACTGTTCCATTTTACAAACTCCTACAAACCAAACTGCAGAAAAATGCAGATTCAAGAGGATCTGTTTCCATCTACATTATTatcatgtctttatttttttgtgatttagatttttttagctatatattttatagagattttgcACTGAATAGATGGATAGAAAGTAATATCATGTAATATCATGCCTGTATATTTTGTTACCAACTTTTAGAGCTTTTTTATTCCCATTATGAAAAATTTTAAGTCTGTAGTTTTGTCTGGATTGgccattttttgtaaaaaactaaatcagtggaattctctctcctcttttaatAAAGATAAATGAATGGATGATTGCTAAACTCGACAGTattgctaattttttttttatttttactcaagcAATCAgatgaaagtaaagtaaatttcGATCATAATGCAGTTTTCATGCCGGTGTTAACATACAGCAGTGTAATGCTTAATAAgaatgaatgttttattttttaagctgCAAAACAAATGTGCTGAAgcttaaaaaaatgcagattattatttatatacactCACCCGCCACTTTACTAGATACAGCTGTCCAACTGTTTGTTAAAGCAAATGttgaatcagccaatcacatggcagcaactcaatgcatttaggcatgtagaagatctgctgcagttcaaaccgAGCATCAGAGAGAGACGTGACTCGGACTCttgaccaaagacttgagacttgactcagactcgtgACTAAAGACTTAAGACTTAACTCAGACTTGTgatcaaagacttgagacttgactcggactcgtgaccaaagacttgaaacttgacTGGGACTCGTgatcaaagacttgagacttAACTCAGACTTGTgatcaaagacttgagacttgactctgactcgtgaccaaagacttgagacttgactcggactcgtgaccaaagacttggAACTTGACTGGGACTCGTgatcaaagacttgagacttgactcagattcgtggccaaagacttgagacttgactcggactcgtgaccaaagacttgaaacttgacTGGGACTCGTgatcaaagacttgagacttCACTCAGACTcatgaccaaagacttgagacttcaCTCAGACTcatgaccaaagacttgagacttgactcgggctcgtgaccaaagacttgtgacttgacccAGACTTGTgatcaaagacttgagacttgactcagactcatgACTAAAGACTTGTGAACATCTCTGCCGTGTCATATCTGAGAATCTCTGAGGAACGTTTCCAGTAGCTTGTTGAATCGATGCCACGaaggattaaggcagttctgaaggTAAAAGAGCCCAGGTTCAACCTGATACTAGCAAGTACtagtgtacctaataaagtggccggtgagtgtATATCCCTGTTTGGTTGCATTGTTCAAATCAAAATCTAATTACAGGAATCCTCCACACACAATCGTTTTAATGAAGTGAACGGCAGCACTGTTTAAAAGCAATAGTGCGAATTCCAGCAAACTGCTGATTGTCATATCTGTAGTACAGCTGATCATTCTGTCTCGAGCATCACGGTGGAGATTAAGGTGTTTAATGCTTGGAAGAAGCCAAGAGAAGTGATGTAAAGACCACTGGAGCTTTTCATCAACCGagtctgcaaaaaaaacaaaccagccACGCAGTTCTAACTTAACATTTGCTTTCTTAAGCCTTTCatgcttttttattgatttattcatttagtttAAATACGGCATCTGTTGAATGTGTTAAGCCTGCTGTGATGACGTAGCGCATGTTATGTTCTCATGAAGCTGTATGTTGCACTTTGACAGAAGCTGATCAAATTAAtctgtaaaatctgtaaaagaTAAATCATGTAATCATggaataaattatataatatgaagaaaaaatgaCTGCATATCATCATTTGGTTCTATGGTGAACTGTTTGTTCATCACACTAATGCCTGGCCCACACTACAGGATTAAATGTTTGTTACAGGGTTTAATCTTTGTTA
>TU17151
ggaggagaacatgatgccaagatgcatgaaaaaactgtgattaaaaaacaccagggttattctatcaaatattgatttctcaactcttaaaactttatgaatatgaacttgtttttttttcttttgcattatttgaggtctgaaagctctgcatcttttttgttatatgagccatttctcatttttgttattttctgtaaataaatgctctaaattagaatatttttattaggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaacataaacctataaatagcaaaatcagagaaactgattcagaaactgaagtgctctcttcatatttttccagagctgtttatggtaAATTCAGTAGAGGGACAGCAGAAGGTGTGGCCAGTGGCCCATTTAATGAGGGTTAAAATCACTGTTCCATTTTACAAACTCCTACAAACCAAACTGCAGAAAAATGCAGATTCAAGAGGATCTGTTTCCATCTACATTATTatcatgtctttatttttttgtgatttagatttttttagctatatattttatagagattttgcACTGAATAGATGGATAGAAAGTAATATCATGTAATATCATGCCTGTATATTTTGTTACCAACTTTTAGAGCTTTTTTATTCCCATTATGAAAAATTTTAAGTCTGTAGTTTTGTCTGGATTGgccattttttgtaaaaaactaaatcagtggaattctctctcctcttttaatAAAGATAAATGAATGGATGATTGCTAAACTCGACAGTattgctaattttttttttatttttactcaagcAATCAgatgaaagtaaagtaaatttcGATCATAATGCAGTTTTCATGCCGGTGTTAACATACAGCAGTGTAATGCTTAATAAgaatgaatgttttattttttaagctgCAAAACAAATGTGCTGAAgcttaaaaaaatgcagattattatttatatacactCACCCGCCACTTTACTAGATACAGCTGTCCAACTGTTTGTTAAAGCAAATGttgaatcagccaatcacatggcagcaactcaatgcatttaggcatgtagaagatctgctgcagttcaaaccgAGCATCAGAGAGAGACGTGACTCGGACTCttgaccaaagacttgagacttgactcagactcgtgACTAAAGACTTAAGACTTAACTCAGACTTGTgatcaaagacttgagacttgactcggactcgtgaccaaagacttgaaacttgacTGGGACTCGTgatcaaagacttgagacttgactcagactcatgaccaaagacttgagacttgactcgggctcgtgaccaaagacttgagacttgactcggactcgtgaccaaagacttgtgacttgacccAGACTTGTgatcaaagacttgagacttgactcagacttgtgatcaaagacttgagacttgactcagactcgtgACTAAAGACTTAAGACTTAACTCAGACTTGTgatcaaagacttgagacttgactctgactcgtgaccaaagacttgagacttgactcggactcgtgaccaaagacttggAACTTGACTGGGACTCGTgatcaaagacttgagacttgactcagattcgtggccaaagacttgagacttgactcggactcgtgaccaaagacttgaaacttgacTGGGACTCGTgatcaaagacttgagacttCACTCAGACTcatgaccaaagacttgagacttcaCTCAGACTcatgaccaaagacttgagacttgactcgggctcgtgaccaaagacttgtgacttgacccAGACTTGTgatcaaagacttgagacttgactcagactcatgACTAAAGACTTGTGAACATCTCTGCCGTGTCATATCTGAGAATCTCTGAGGAACGTTTCCAGTAGCTTGTTGAATCGATGCCACGaaggattaaggcagttctgaaggTAAAAGAGCCCAGGTTCAACCTGATACTAGCAAGTACtagtgtacctaataaagtggccggtgagtgtATATCCCTGTTTGGTTGCATTGTTCAAATCAAAATCTAATTACAGGAATCCTCCACACACAATCGTTTTAATGAAGTGAACGGCAGCACTGTTTAAAAGCAATAGTGCGAATTCCAGCAAACTGCTGATTGTCATATCTGTAGTACAGCTGATCATTCTGTCTCGAGCATCACGGTGGAGATTAAGGTGTTTAATGCTTGGAAGAAGCCAAGAGAAGTGATGTAAAGACCACTGGAGCTTTTCATCAACCGagtctgcaaaaaaaacaaaccagccACGCAGTTCTAACTTAACATTTGCTTTCTTAAGCCTTTCatgcttttttattgatttattcatttagtttAAATACGGCATCTGTTGAATGTGTTAAGCCTGCTGTGATGACGTAGCGCATGTTATGTTCTCATGAAGCTGTATGTTGCACTTTGACAGAAGCTGATCAAATTAAtctgtaaaatctgtaaaagaTAAATCATGTAATCATggaataaattatataatatgaagaaaaaatgaCTGCATATCATCATTTGGTTCTATGGTGAACTGTTTGTTCATCACACTAATGCCTGGCCCACACTACAGGATTAAATGTTTGTTACAGGGTTTAATCTTTGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17147 True 2717 lncRNA 0.51 3 21977341 21982608
TU17149 False 2292 lncRNA 0.36 3 21979774 21982608
TU17150 False 2452 lncRNA 0.36 3 21979774 21982608
TU17151 False 2644 lncRNA 0.37 3 21979774 21982608

Neighbor

gene id symbol gene type direction distance location
LOC103032573 NA coding downstream 224446 21747420 ~ 21752895 (-)
LOC107197401 NA coding downstream 257057 21706213 ~ 21720284 (-)
LOC103031934 sik2,sik2b,LOC108436519,LOC107657230,LOC107717286,LOC107709128,LOC107586235,LOC108277697,LOC107601680 coding downstream 278302 21610154 ~ 21699039 (-)
LOC103034230 NA coding downstream 446596 21518007 ~ 21530745 (-)
LOC103030662 LOC108436499 coding downstream 466135 21496598 ~ 21511206 (-)
LOC103036974 drd2,LOC107670954,LOC107586233,LOC107709110 coding upstream 1826 21984434 ~ 22058836 (-)
scn3b NA coding upstream 159162 22141770 ~ 22164569 (-)
LOC103032877 NA coding upstream 196808 22179416 ~ 22191537 (-)
LOC103037608 LOC108277452 coding upstream 222454 22205062 ~ 22247459 (-)
LOC111194282 LOC108277600 coding upstream 276311 22258919 ~ 22269228 (-)
G12768 NA non-coding downstream 9542 21937785 ~ 21967799 (-)
G12749 NA non-coding downstream 125281 21797969 ~ 21852060 (-)
G12746 NA non-coding downstream 221878 21754671 ~ 21755463 (-)
G12736 NA non-coding downstream 271493 21704259 ~ 21705848 (-)
G12740 NA non-coding downstream 282547 21694370 ~ 21694794 (-)
G12782 NA non-coding upstream 8113 21990721 ~ 21991991 (-)
G12789 NA non-coding upstream 81018 22063626 ~ 22064784 (-)
G12791 NA non-coding upstream 83372 22065980 ~ 22066356 (-)
G12792 NA non-coding upstream 104209 22086817 ~ 22087363 (-)
G12795 NA non-coding upstream 129971 22112579 ~ 22130047 (-)
trnak-cuu NA other downstream 1002187 20975082 ~ 20975154 (-)
G11917 NA other downstream 1894899 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 2175018 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 2703487 19241756 ~ 19273854 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other downstream 2865769 19108713 ~ 19111572 (-)
G12767 NA other upstream 11199 21993807 ~ 21994751 (-)
LOC111193708 NA other upstream 1556649 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 1801863 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 1921575 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 3068352 25050960 ~ 25056101 (-)

Expression


Co-expression Network