G12789


Basic Information

Item Value
gene id G12789
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22063626 ~ 22064784 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17178
gtggtgtggggtatgtgagctgtggagtgtgtgtggtatggagtgtgtggggtgtggggtatgtgtgctgtggagtgtgtgtgtggtttaaagtgtgtgtggtgtggggtatgtgtggtgtggagtgtgtggtgtggggtgtgaagtgtgtggtatgtgtggggtggagtgtgtggtgtggggtatgtgagctgtggagtgtgtgtggtttaaagtgtgtgtggtgtggggtttgtgtggtgtggagtgtgtgtgtggtatgtgtgaggtggagtgtgtgtggtgtggggtatgtgtggtttaaagtgtgtggtgtggggtatgtgtgat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17178 True 330 lncRNA 0.53 3 22063626 22064784

Neighbor

gene id symbol gene type direction distance location
LOC103036974 drd2,LOC107670954,LOC107586233,LOC107709110 coding downstream 4790 21984434 ~ 22058836 (-)
LOC103032573 NA coding downstream 310731 21747420 ~ 21752895 (-)
LOC107197401 NA coding downstream 343342 21706213 ~ 21720284 (-)
LOC103031934 sik2,sik2b,LOC108436519,LOC107657230,LOC107717286,LOC107709128,LOC107586235,LOC108277697,LOC107601680 coding downstream 364587 21610154 ~ 21699039 (-)
LOC103034230 NA coding downstream 532881 21518007 ~ 21530745 (-)
scn3b NA coding upstream 76986 22141770 ~ 22164569 (-)
LOC103032877 NA coding upstream 114632 22179416 ~ 22191537 (-)
LOC103037608 LOC108277452 coding upstream 140278 22205062 ~ 22247459 (-)
LOC111194282 LOC108277600 coding upstream 194135 22258919 ~ 22269228 (-)
LOC111194286 LOC108277598 coding upstream 204439 22269223 ~ 22283102 (-)
G12782 NA non-coding downstream 71635 21990721 ~ 21991991 (-)
G12769 NA non-coding downstream 81018 21977341 ~ 21982608 (-)
G12768 NA non-coding downstream 95827 21937785 ~ 21967799 (-)
G12749 NA non-coding downstream 211566 21797969 ~ 21852060 (-)
G12746 NA non-coding downstream 308163 21754671 ~ 21755463 (-)
G12791 NA non-coding upstream 1196 22065980 ~ 22066356 (-)
G12792 NA non-coding upstream 22033 22086817 ~ 22087363 (-)
G12795 NA non-coding upstream 47795 22112579 ~ 22130047 (-)
G12797 NA non-coding upstream 63221 22128005 ~ 22188338 (-)
G12743 NA non-coding upstream 68573 22133357 ~ 22139838 (-)
G12767 NA other downstream 68875 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 1088472 20975082 ~ 20975154 (-)
G11917 NA other downstream 1981184 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 2261303 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 2789772 19241756 ~ 19273854 (-)
LOC111193708 NA other upstream 1474473 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 1719687 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 1839399 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 2986176 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 3408950 25473734 ~ 25496958 (-)

Expression


Co-expression Network