G12795


Basic Information

Item Value
gene id G12795
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22112579 ~ 22130047 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17185
gcattttcacccagtctttttattcttatttaatcattaacaataacatgaccttaactgaggctttagtgagatcctgcagttctttaaattaaatgttgtttcGGGTTCTTTTCTGAACTCCTGGATGAgctgttcatgcccttttggagtaattttgatCAActggccggtcactcctgggaaggttcaccaccagtgttccatgttttcaccATTTGTGGATGTTAAATAGCTCTCATtttggttctctggagtcccaaaactttagaaatgacttagaaataatcttttccagactgatagatgaataatcaatgactttgttttctttaaagtcttgctttttgagataatttatctgcttcatgttTGATGAGTTTTGTACAAATGTCCACATTGTGAAAGTCATCCCTGATTGAAACAGAAAAGAGATGAGGATTCCAGGCTTTtgatacaatgtgtgtgtgtgtgtttctgcgtgTGTTGAataaagcagtgagagagatagacaaaacATCTCTTCTCTGCTATCTTCTATCACATTtggtgtgcgtgtgcgtgtctgtgtgtgtgtaagtgtgtatgtttctAACATTTGTCTAACTCTGATATTCTATAAGCGAATCTAATGAtgaatataatgtgtgtgtggctgtgtcagAATCGCTCCCTATTCcagaaatagtgcactatatagtgtGTAAACCATTTTTGCAGTACTGTTTAAAACCGCAGCAGTACATTCTATTCCCTATATAGTTCACTATGAAAAACCTAATGCATCACAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17185 True 793 lncRNA 0.36 2 22112579 22130047

Neighbor

gene id symbol gene type direction distance location
LOC103036974 drd2,LOC107670954,LOC107586233,LOC107709110 coding downstream 53743 21984434 ~ 22058836 (-)
LOC103032573 NA coding downstream 359684 21747420 ~ 21752895 (-)
LOC107197401 NA coding downstream 392295 21706213 ~ 21720284 (-)
LOC103031934 sik2,sik2b,LOC108436519,LOC107657230,LOC107717286,LOC107709128,LOC107586235,LOC108277697,LOC107601680 coding downstream 413540 21610154 ~ 21699039 (-)
LOC103034230 NA coding downstream 581834 21518007 ~ 21530745 (-)
scn3b NA coding upstream 11723 22141770 ~ 22164569 (-)
LOC103032877 NA coding upstream 49369 22179416 ~ 22191537 (-)
LOC103037608 LOC108277452 coding upstream 75015 22205062 ~ 22247459 (-)
LOC111194282 LOC108277600 coding upstream 128872 22258919 ~ 22269228 (-)
LOC111194286 LOC108277598 coding upstream 139176 22269223 ~ 22283102 (-)
G12792 NA non-coding downstream 25216 22086817 ~ 22087363 (-)
G12791 NA non-coding downstream 46223 22065980 ~ 22066356 (-)
G12789 NA non-coding downstream 47795 22063626 ~ 22064784 (-)
G12782 NA non-coding downstream 120588 21990721 ~ 21991991 (-)
G12769 NA non-coding downstream 129971 21977341 ~ 21982608 (-)
G12743 NA non-coding upstream 3310 22133357 ~ 22139838 (-)
G12803 NA non-coding upstream 11032 22141079 ~ 22234862 (-)
G12813 NA non-coding upstream 91152 22221199 ~ 22230856 (-)
G12834 LOC108436505,LOC108278373,LOC107586299,LOC107696005,LOC107709103 non-coding upstream 225797 22355844 ~ 22365170 (-)
G12849 NA non-coding upstream 339328 22469375 ~ 22470901 (-)
G12767 NA other downstream 117828 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 1137425 20975082 ~ 20975154 (-)
G11917 NA other downstream 2030137 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 2310256 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 2838725 19241756 ~ 19273854 (-)
LOC111193708 NA other upstream 1409210 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 1654424 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 1774136 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 2920913 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 3343687 25473734 ~ 25496958 (-)

Expression


Co-expression Network