G12797


Basic Information

Item Value
gene id G12797
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22128005 ~ 22188338 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17187
caatgaaactgaaacacctggttttagagcacaataattgattgtagtgacggacagttctggtggaaacaggagagttgaggtgcacattgaattctgcgtgatttgatcagccgtggttttatgtttttttggatacaatccgggttagcacccgaacatccctttcagacagcttcctcttacagcgtccacagttaatcctgttggatgtggttggttcttcttggtggtatgctgacattaccctggataccgtggctcttgatgcatcacaaagacttgctgtcttggtcacagatgctccagcaagacgtgcaccaacaatttgtcctcttttgaactctggtatgtcccccataatgttgtgtgcattgtaatatttagagcagaactgtgctcttaccctgctaattgaaccttcacactctgctcttactgctgcaatgtgcaattaatgaagattgaacaccaggctgctccaatttagccatgaaacctaaaatcccacactaaaacgatgacaggtctttcagtttcattgtccaacccctgtatatttctaatgtgtttgtgtcatttggcgacacattgaaattacaactaatAAAACATcctttacacacacattgtagtaATAAGCCATtactgggtaaaataaagtaaattaatcagacaatttcattggcttactgaaataatcattcaacgtgtttccacttagcctagattatataaacatgcataaaatgttgagctggagttgttggagatggcagCATTGTCATTATTGGAAGATATTGCTAATGGCTGAATTCATCAAAAGCTTGTTTTCCGTGACCATTCTGATATTTGTTTTTGCCCATAAAGAGGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17187 True 876 lncRNA 0.43 2 22128005 22188338

Neighbor

gene id symbol gene type direction distance location
LOC103036974 drd2,LOC107670954,LOC107586233,LOC107709110 coding downstream 69169 21984434 ~ 22058836 (-)
LOC103032573 NA coding downstream 375110 21747420 ~ 21752895 (-)
LOC107197401 NA coding downstream 407721 21706213 ~ 21720284 (-)
LOC103031934 sik2,sik2b,LOC108436519,LOC107657230,LOC107717286,LOC107709128,LOC107586235,LOC108277697,LOC107601680 coding downstream 428966 21610154 ~ 21699039 (-)
LOC103034230 NA coding downstream 597260 21518007 ~ 21530745 (-)
LOC103037608 LOC108277452 coding upstream 16724 22205062 ~ 22247459 (-)
LOC111194282 LOC108277600 coding upstream 70581 22258919 ~ 22269228 (-)
LOC111194286 LOC108277598 coding upstream 80885 22269223 ~ 22283102 (-)
LOC103035063 NA coding upstream 1462079 23650417 ~ 23724768 (-)
c1qtnf5 c1qtnf5 coding upstream 1578689 23767027 ~ 23775316 (-)
G12792 NA non-coding downstream 40642 22086817 ~ 22087363 (-)
G12791 NA non-coding downstream 61649 22065980 ~ 22066356 (-)
G12789 NA non-coding downstream 63221 22063626 ~ 22064784 (-)
G12782 NA non-coding downstream 136014 21990721 ~ 21991991 (-)
G12769 NA non-coding downstream 145397 21977341 ~ 21982608 (-)
G12813 NA non-coding upstream 32861 22221199 ~ 22230856 (-)
G12834 LOC108436505,LOC108278373,LOC107586299,LOC107696005,LOC107709103 non-coding upstream 167506 22355844 ~ 22365170 (-)
G12849 NA non-coding upstream 281037 22469375 ~ 22470901 (-)
G12854 NA non-coding upstream 287966 22476304 ~ 22519510 (-)
G12856 NA non-coding upstream 305730 22494068 ~ 22517783 (-)
G12767 NA other downstream 133254 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 1152851 20975082 ~ 20975154 (-)
G11917 NA other downstream 2045563 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 2325682 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 2854151 19241756 ~ 19273854 (-)
LOC111193708 NA other upstream 1350919 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 1596133 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 1715845 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 2862622 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 3285396 25473734 ~ 25496958 (-)

Expression


Co-expression Network