G12860 (tmem136,LOC108436527)


Basic Information

Item Value
gene id G12860
gene name tmem136,LOC108436527
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22528680 ~ 22531101 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17292
acaGATTAAAAGCCAGTGTGCTGCACAGATGTATACATAAtcgtaaaaaaaatcactgttaatCAGGTAAGACAGAATTATGTCagagaaaaaagtaaacaaTTAACAGAGATGTACATTTGCTGGCAGTTCAGTTTGAAAGACTAGTGGCAGttcattaaaggagaactccggtgtgaaattgAGTTTAGGTGTAGTAAAACAGGATAAAGAGAACTaaactttgttgaatagctcacccctgctctcctgcagctttctgagatccagaaattttgtGCAGCTTGTCGAAACAGAAtagaatgggttttaatggggcatatttttttgcccctgcagataaggttagtactctttattatgttttactacacctaaactcaatttcacaccggagttctcctttaaaacacaCAGGGCCCTCTCAGTCCCTCTTAATCTCTTGGCCGTTGACTTCAGCCTGTACCTGCCGGCTCTTCCAGCGCCGGTGTTTCACGCTGCTCTTGTGATAAGCAAATCGTGCGATATCAGCCACGAACAACCACGACAGGACGTACATGGCCACCCCGCCGCACTTGATGATGAACTTTGGCCTGGGCGAGATCAGCTCGCAGTACAGCATGGCGCCGCCTACGAACACGCGCATGATCACGAACAAGACCACAAACAGGACGTCCACCAGGTCGCCCAGGAAGGTCTCGTAGCGGCCCGAGCGCTTCAGGAACCAGCGCGTCTGCAGCAGGGGGTTGGTGATCTCGCTGCCGAAGATGACGGCGCACGCCTCGATGCCGGACTCGCCCAGCCACAGGGTCAGGAGCATACCCAGAATGCTCATGGTGTGGTGGGCAAGCATCACCAGACCTTCCGTCTGGAAGTAAATGCACCAGCCCATGTCGAAGATGAAGTAACCCAGACTCAGAACCATAGCTGACATCTGGAGGGTGGTGTTTTT

Function

NR:

description
PREDICTED: transmembrane protein 136-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17292 True 952 lncRNA 0.42 2 22528680 22531101

Neighbor

gene id symbol gene type direction distance location
LOC111194286 LOC108277598 coding downstream 245578 22269223 ~ 22283102 (-)
LOC111194282 LOC108277600 coding downstream 259452 22258919 ~ 22269228 (-)
LOC103037608 LOC108277452 coding downstream 281221 22205062 ~ 22247459 (-)
LOC103032877 NA coding downstream 337143 22179416 ~ 22191537 (-)
scn3b NA coding downstream 364111 22141770 ~ 22164569 (-)
LOC103035063 NA coding upstream 1119316 23650417 ~ 23724768 (-)
c1qtnf5 c1qtnf5 coding upstream 1235926 23767027 ~ 23775316 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding upstream 1328652 23859753 ~ 23895075 (-)
LOC103036322 LOC108439975 coding upstream 1378310 23909411 ~ 23927376 (-)
nlrx1 nlrx1 coding upstream 1397714 23928815 ~ 23947378 (-)
G12857 oaf,LOC107709135,LOC107586231,LOC107717291,LOC107657251,LOC107601720 non-coding downstream 2908 22514524 ~ 22525772 (-)
G12854 NA non-coding downstream 9170 22476304 ~ 22519510 (-)
G12856 NA non-coding downstream 10897 22494068 ~ 22517783 (-)
G12849 NA non-coding downstream 57779 22469375 ~ 22470901 (-)
G12834 LOC108436505,LOC108278373,LOC107586299,LOC107696005,LOC107709103 non-coding downstream 163510 22355844 ~ 22365170 (-)
G12871 NA non-coding upstream 73257 22604358 ~ 22612021 (-)
G12879 NA non-coding upstream 113571 22644672 ~ 22645561 (-)
G12881 NA non-coding upstream 237498 22768599 ~ 22768941 (-)
G12889 NA non-coding upstream 355545 22886646 ~ 22886928 (-)
G12892 NA non-coding upstream 356753 22887854 ~ 22893181 (-)
G12767 NA other downstream 533929 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 1553526 20975082 ~ 20975154 (-)
G11917 NA other downstream 2446238 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 2726357 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 3254826 19241756 ~ 19273854 (-)
LOC111193708 NA other upstream 1008156 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 1253370 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 1373082 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 2519859 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 2942633 25473734 ~ 25496958 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00004525 NA coding CM030121.1 CM030121.1 52726785 ~ 52733805 (-)