G12879


Basic Information

Item Value
gene id G12879
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22644672 ~ 22645561 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17316
ttatTTCCCGCTTTTTATTCTTAACGTTTCTTAACGTTATATTTCTTCTCAAAGTGCTTCAGTTTTCTGTTCCAGTTATAGCGCCTATAGTTCACGAGATACGagagataaaaacataaaagagataaaacataaaaggtGGTTTTGGAGACTCTCGATGTAAcgcgttttttcttttttaaaaagcggtttttgtttctttttagccGTTAAAACGGTTAAAACCGTTAAGATAGACTAACTGTGAAGGAAACCAGCTTAAGGACACTTCAGTTTAACTGCGGCTATTCCCTCCCTCAGTAAATCCATCAGATTCCTCCAGAGGTGTGATGCGAAATCAAGCGCGAGCTGTGGAAAGAAGAAAAATCCGCATCCCAGCAAAGAAAGCCTCCGAGCTTTAAGTCAATTTAACCCAAAAGAAAGGGAACCTTACTCTCCACTTTTCTGCTCCTGGTGTAAAATGAAGAGCTCTCCTCCTCCCGGGCTCGGTAGCTGATCCTCCGGGGAAGGGAAGGCAGATTTCTCCGCGGTTCGGAGAGAAAAGCTGGagaagaacagcagcagcagtcgctCCGCGTGAAGAGCTGGGCTCGAGCTCTTCACTCCTCCTCCTGCCGCCGCCGAGTGCCGAGAGATACAGCAGCCTCTCGCGCTCGGGCTCGAGCTCCAGCTCGCATCACGTTTAGAGAACCTGGACGTTGGTGAACGTGAGGAACGTCTGGAGATGATCGGCTGGAGAAGAAGTGGCCTCCATAAAACACAGGCGCGCGGTCTGTTAGATAGAGAGAAATGCTGGCAACCCAAGCGCGTGCAccgactgactgactcactgagaGAGtcactaagagagagagagtgcgcgcgcgcccctctgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17316 True 890 lncRNA 0.27 1 22644672 22645561

Neighbor

gene id symbol gene type direction distance location
LOC111194286 LOC108277598 coding downstream 361570 22269223 ~ 22283102 (-)
LOC111194282 LOC108277600 coding downstream 375444 22258919 ~ 22269228 (-)
LOC103037608 LOC108277452 coding downstream 397213 22205062 ~ 22247459 (-)
LOC103032877 NA coding downstream 453135 22179416 ~ 22191537 (-)
scn3b NA coding downstream 480103 22141770 ~ 22164569 (-)
LOC103035063 NA coding upstream 1004856 23650417 ~ 23724768 (-)
c1qtnf5 c1qtnf5 coding upstream 1121466 23767027 ~ 23775316 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding upstream 1214192 23859753 ~ 23895075 (-)
LOC103036322 LOC108439975 coding upstream 1263850 23909411 ~ 23927376 (-)
nlrx1 nlrx1 coding upstream 1283254 23928815 ~ 23947378 (-)
G12871 NA non-coding downstream 32651 22604358 ~ 22612021 (-)
G12860 tmem136,LOC108436527 non-coding downstream 113571 22528680 ~ 22531101 (-)
G12857 oaf,LOC107709135,LOC107586231,LOC107717291,LOC107657251,LOC107601720 non-coding downstream 118900 22514524 ~ 22525772 (-)
G12854 NA non-coding downstream 125162 22476304 ~ 22519510 (-)
G12856 NA non-coding downstream 126889 22494068 ~ 22517783 (-)
G12881 NA non-coding upstream 123038 22768599 ~ 22768941 (-)
G12889 NA non-coding upstream 241085 22886646 ~ 22886928 (-)
G12892 NA non-coding upstream 242293 22887854 ~ 22893181 (-)
G12890 NA non-coding upstream 288221 22933782 ~ 22965232 (-)
G12946 NA non-coding upstream 342973 22988534 ~ 23087663 (-)
G12767 NA other downstream 649921 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 1669518 20975082 ~ 20975154 (-)
G11917 NA other downstream 2562230 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 2842349 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 3370818 19241756 ~ 19273854 (-)
LOC111193708 NA other upstream 893696 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 1138910 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 1258622 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 2405399 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 2828173 25473734 ~ 25496958 (-)

Expression


Co-expression Network