LOC103031983


Basic Information

Item Value
gene id LOC103031983
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23528299 ~ 23536818 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17835
TAATCAGTGTGGTGATtggctgcagctgctgcagtgAATTAGCGGGAGAGCTCCTGCAGCAGAACTACAGCAGggtcAGCTGATCAAGGGATCGAAAACATTGATGTTGCCAGATTTATGTTCAGTATTCTTTAACCCGACAGGTGAAAAGTGCTCAAAATTTAaagAAGACCTTTTTGCTGTTTCTACCACACCTGAAGAAAGACCTGGAGAGTTTTGTTGAACTTTGAAACAATCATCATCCGATCCAGACCAAAAACGGCACGACTCCTGAGCAGCTACTGCTACTACAGCACGGGGGAAAGCAGTATTAatcagccacaaaatactgagGAGGTGGATGGtgtgatggagagatggatgagGAGATCAGGGTTCCTCAAACGGAGCTGCAAATACAAGATCTCAGGATCAGACGGCTTCCACAGCACTGTTctagaaaaatataaacacagaagAAATAACTTTCAGAACACATTTACAGCTGCTTTCATATACTTTAtgtatgtgtaaataaaatgtatttgcatGTGTCTGAGTttcatggggagagagagacagacggagTAGGGAGATAGaaaagggat
>XR_002650649.1
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgttacagggtcAGCTGATCAAGGGATCGAAAACATTGATGTTGCCAGATTTATGTTCAGTATTCTTTAACCCGACAGGTGAAAAGTGCTCAAAATTTAaagAAGACCTTTTTGCTGTTTCTACCACACCTGAAGAAAGACCTGGAGAGTTTTGTTGAACTTTGAAACAATCATCATCCGATCCAGACCAAAAACGGCACGACTCCTGAGCAGCTACTGCTACTACAGCACGGGGGAAAGCAGTATTAatcagccacaaaatactgagGAGGTGGATGGtgtgatggagagatggatgagGAGATCAGGGTTCCTCAAACGGAGCTGCAAATACAAGATCTCAGGATCAGACGGCTTCCACAGCACTGTTctagaaaaatataaacacagaagAAATAACTTTCAGAACACATTTACAGCTGCTTTCATATACTTTAtgtatgtgtaaataaaatgtatttgcatGTG

Function

GO: NA

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
TU17835 True 587 lncRNA 0.43 4 23528299 23536818
XR_002650649.1 False 495 lncRNA 0.41 3 23528353 23533859

Neighbor

gene id symbol gene type direction distance location
LOC111194286 LOC108277598 coding downstream 1245197 22269223 ~ 22283102 (-)
LOC111194282 LOC108277600 coding downstream 1259071 22258919 ~ 22269228 (-)
LOC103037608 LOC108277452 coding downstream 1280840 22205062 ~ 22247459 (-)
LOC103032877 NA coding downstream 1336762 22179416 ~ 22191537 (-)
scn3b NA coding downstream 1363730 22141770 ~ 22164569 (-)
LOC103035063 NA coding upstream 113599 23650417 ~ 23724768 (-)
c1qtnf5 c1qtnf5 coding upstream 230209 23767027 ~ 23775316 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding upstream 322935 23859753 ~ 23895075 (-)
LOC103036322 LOC108439975 coding upstream 372593 23909411 ~ 23927376 (-)
nlrx1 nlrx1 coding upstream 391997 23928815 ~ 23947378 (-)
G13268 NA non-coding downstream 233 23526236 ~ 23528066 (-)
G12951 NA non-coding downstream 436458 23091598 ~ 23091841 (-)
G12946 NA non-coding downstream 440636 22988534 ~ 23087663 (-)
G12890 NA non-coding downstream 563067 22933782 ~ 22965232 (-)
G12892 NA non-coding downstream 635118 22887854 ~ 22893181 (-)
G13291 NA non-coding upstream 35223 23572041 ~ 23620191 (-)
G13293 NA non-coding upstream 64007 23600825 ~ 23602514 (-)
G13296 NA non-coding upstream 73427 23610245 ~ 23710537 (-)
G13298 NA non-coding upstream 77312 23614130 ~ 23642892 (-)
G13303 NA non-coding upstream 137392 23674210 ~ 23724463 (-)
G12767 NA other downstream 1533548 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 2553145 20975082 ~ 20975154 (-)
G11917 NA other downstream 3445857 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 3725976 19785981 ~ 19802323 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other downstream 4254445 19241756 ~ 19273854 (-)
LOC111193708 NA other upstream 2439 23539257 ~ 23553970 (-)
LOC103035686 kmt2a other upstream 247653 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 367365 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 1514142 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 1936916 25473734 ~ 25496958 (-)

Expression


Co-expression Network