G13307


Basic Information

Item Value
gene id G13307
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23750470 ~ 23752519 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17876
GCAGCcacatttatcattttattaagaTTCTTTCTAAAGAATGGTTAaactttttcagttttcagtgcTGGCCTGTAAATATACAGacaattaatcacaacaaccaccaaaaataaaaatcagcatCCATCTATATGATCTTCAGACAAGAAGCACACATATCTTaaccaaaattaaaataaaataaaaactgggaGGAAAACATCTTGTATTAAAACACTCAAATATACCATATTAGCTAAAGACAGACCACAGATCTGGCAGTCAGCAGCATTTGGCAAAATATTCTAACCATCCAAAAACACTACAACATAATGCAGTGAATAAGCATTTATTCTTTAGTATAAAATCATCATCAGCTGAAGCGAATGTAAACTGCACTGCTCACATACAGACCAGGATTCTGTGCTTCATTGGTTTCATTCAGTATTCATTTTGGCACTGGTTTgcaaaagcatttatttttctattttaaatgtttttgtaattgtaAATGCTAATGTATATTATGAAGGATTTTAATGAGAGGGAGAGTTAATCATcactgagtgtgtttacatgcacttcattattcaattattgcggaaaaaatgaagagagcacttcagtttctgaatcagtttctctgattttactatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattacaaataaaa

Function

NR:

description
PREDICTED: zinc finger protein 551-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17876 True 723 lncRNA 0.39 2 23750470 23752519

Neighbor

gene id symbol gene type direction distance location
LOC103035063 NA coding downstream 25702 23650417 ~ 23724768 (-)
LOC111194286 LOC108277598 coding downstream 1467368 22269223 ~ 22283102 (-)
LOC111194282 LOC108277600 coding downstream 1481242 22258919 ~ 22269228 (-)
LOC103037608 LOC108277452 coding downstream 1503011 22205062 ~ 22247459 (-)
LOC103032877 NA coding downstream 1558933 22179416 ~ 22191537 (-)
c1qtnf5 c1qtnf5 coding upstream 14508 23767027 ~ 23775316 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding upstream 107234 23859753 ~ 23895075 (-)
LOC103036322 LOC108439975 coding upstream 156892 23909411 ~ 23927376 (-)
nlrx1 nlrx1 coding upstream 176296 23928815 ~ 23947378 (-)
brip1 NA coding upstream 815072 24567591 ~ 24687178 (-)
G13303 NA non-coding downstream 26007 23674210 ~ 23724463 (-)
G13305 NA non-coding downstream 29401 23720584 ~ 23721069 (-)
G13296 NA non-coding downstream 39933 23610245 ~ 23710537 (-)
G13298 NA non-coding downstream 107578 23614130 ~ 23642892 (-)
G13291 NA non-coding downstream 130279 23572041 ~ 23620191 (-)
G13311 NA non-coding upstream 1032 23753551 ~ 23754490 (-)
G13317 NA non-coding upstream 19129 23771648 ~ 23771966 (-)
G13325 NA non-coding upstream 144400 23896919 ~ 23903053 (-)
G13327 NA non-coding upstream 163194 23915713 ~ 23916288 (-)
G13330 NA non-coding upstream 236416 23988935 ~ 23989467 (-)
LOC111193708 NA other downstream 196500 23539257 ~ 23553970 (-)
G12767 NA other downstream 1755719 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 2775316 20975082 ~ 20975154 (-)
G11917 NA other downstream 3668028 19998440 ~ 20082442 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other downstream 3948147 19785981 ~ 19802323 (-)
LOC103035686 kmt2a other upstream 31952 23784471 ~ 23853298 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other upstream 151664 23904183 ~ 23908771 (-)
spcs2 spcs2,LOC107677086 other upstream 1298441 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 1721215 25473734 ~ 25496958 (-)
LOC111193738 NA other upstream 1771268 25523787 ~ 25524603 (-)

Expression


Co-expression Network