G13322 (phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819)


Basic Information

Item Value
gene id G13322
gene name phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23904183 ~ 23908771 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17900
TCTCAAATGACTGAGCAACATTTTTTGGCAAAacctaaaatattggaaatgttGCCCGGCTTTTTTCCAGTTCCTAAATTCACTACTAACCATCATCATTTCTGTAGGGAGGCATCCTGGATTtCTCTAAGAACAAGATCGATTTCCTCAGTGACTCGTTCAGCGTCCTCCATTCTGAAGCACATGGGGGGCTTGAATTTGACGACGTTCTCCCACGGTCCATCcgtactcaaacatatatactTCTCCTTCATCCTCCTAATGAGCAGCGCTGCCTCCTCGGTCGCAGGAGTTAAATCCACTCTATCTTTAACCAATTCAAACCCCACAAACAGCCCCGCACCACGTACGTCTCCGATGATTGGGTGTTTGATCTGGAGCTGTTTGAGGAGATCCTTCAGGTGATTCCCAACTCGAACTGCGTTTCCTCTCAGATCCTCTTTCTCAATCACATCTAACACTGCCAGACCAATCGCACACGACACCGGGTTTCCTCCAAAAGTGTTGAAGTACTCCACTCCGTTAGCTGTGAAGGCTCCAGCTATCTCCTCGGTGGTGACCACACATGCCAGCGGATGCCCGTTTCCCATGGGTTTGCCCATCGTCACAATATCAGGACAGAAATCCTCTCCCTGGAGCTGAAAGGCCCAGTAGTGGCTTCCAACTCGACCAAATCCGGTCTGAATTTCATCAGCTACAAACACTCCCCCTGCTGCT

Function

symbol description
phykpl Predicted to enable pyridoxal phosphate binding activity and transaminase activity. Orthologous to human PHYKPL (5-phosphohydroxy-L-lysine phospho-lyase).

NR:

description
PREDICTED: 5-phosphohydroxy-L-lysine phospho-lyase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17900 True 717 TUCP 0.49 5 23904183 23908771

Neighbor

gene id symbol gene type direction distance location
ube4a ube4a,LOC107718272,LOC107690452 coding downstream 9108 23859753 ~ 23895075 (-)
c1qtnf5 c1qtnf5 coding downstream 128867 23767027 ~ 23775316 (-)
LOC103035063 NA coding downstream 179415 23650417 ~ 23724768 (-)
LOC111194286 LOC108277598 coding downstream 1621081 22269223 ~ 22283102 (-)
LOC111194282 LOC108277600 coding downstream 1634955 22258919 ~ 22269228 (-)
LOC103036322 LOC108439975 coding upstream 640 23909411 ~ 23927376 (-)
nlrx1 nlrx1 coding upstream 20044 23928815 ~ 23947378 (-)
brip1 NA coding upstream 658820 24567591 ~ 24687178 (-)
ppm1d ppm1d,LOC107548567,LOC107743648,LOC107664959,LOC107685067,LOC107723873,LOC107562958 coding upstream 781304 24690075 ~ 24699460 (-)
pgm2l1 pgm2l1,LOC107684026,LOC107677044 coding upstream 1078295 24987066 ~ 25003911 (-)
G13325 NA non-coding downstream 1130 23896919 ~ 23903053 (-)
G13304 NA non-coding downstream 83313 23715440 ~ 23820870 (-)
G13317 NA non-coding downstream 132217 23771648 ~ 23771966 (-)
G13311 NA non-coding downstream 149693 23753551 ~ 23754490 (-)
G13307 NA non-coding downstream 151664 23750470 ~ 23752519 (-)
G13327 NA non-coding upstream 6942 23915713 ~ 23916288 (-)
G13330 NA non-coding upstream 80164 23988935 ~ 23989467 (-)
G13331 NA non-coding upstream 83948 23992719 ~ 24071966 (-)
G13341 NA non-coding upstream 199881 24108652 ~ 24145236 (-)
LOC111193726 NA non-coding upstream 568947 24477718 ~ 24486728 (-)
LOC103035686 kmt2a other downstream 50885 23784471 ~ 23853298 (-)
LOC111193708 NA other downstream 350213 23539257 ~ 23553970 (-)
G12767 NA other downstream 1909432 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 2929029 20975082 ~ 20975154 (-)
G11917 NA other downstream 3821741 19998440 ~ 20082442 (-)
spcs2 spcs2,LOC107677086 other upstream 1142189 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 1564963 25473734 ~ 25496958 (-)
LOC111193738 NA other upstream 1615016 25523787 ~ 25524603 (-)
G13677 rnf168 other upstream 1816142 25724913 ~ 25726156 (-)
nars2 nars2,LOC107670421,LOC107740380,LOC107724941,LOC107699825 other upstream 2093560 26002331 ~ 26016396 (-)

Expression


Co-expression Network