G13331


Basic Information

Item Value
gene id G13331
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23992719 ~ 24071966 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17914
aagttcatattcataaagttttaagagttcagaaataatcaatatttggtggaataacccttgtttttaatcagtttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgtaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtaaa
>TU17915
taaagttttaagagttcagaaataatcaatatttggtggaataaccctgatggtttttaatcacatttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgtaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtaaaatcaaagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17914 True 253 lncRNA 0.34 2 24000084 24019447
TU17915 False 252 lncRNA 0.47 3 23992719 24071966

Neighbor

gene id symbol gene type direction distance location
nlrx1 nlrx1 coding downstream 45341 23928815 ~ 23947378 (-)
LOC103036322 LOC108439975 coding downstream 65343 23909411 ~ 23927376 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding downstream 97644 23859753 ~ 23895075 (-)
c1qtnf5 c1qtnf5 coding downstream 217403 23767027 ~ 23775316 (-)
LOC103035063 NA coding downstream 267951 23650417 ~ 23724768 (-)
brip1 NA coding upstream 495625 24567591 ~ 24687178 (-)
ppm1d ppm1d,LOC107548567,LOC107743648,LOC107664959,LOC107685067,LOC107723873,LOC107562958 coding upstream 618109 24690075 ~ 24699460 (-)
pgm2l1 pgm2l1,LOC107684026,LOC107677044 coding upstream 915100 24987066 ~ 25003911 (-)
LOC103033355 abcg1,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC108277612,LOC107677096 coding upstream 935026 25006992 ~ 25038802 (-)
rnf169 rnf169 coding upstream 990721 25062687 ~ 25072518 (-)
G13330 NA non-coding downstream 3252 23988935 ~ 23989467 (-)
G13327 NA non-coding downstream 76431 23915713 ~ 23916288 (-)
G13325 NA non-coding downstream 89666 23896919 ~ 23903053 (-)
G13317 NA non-coding downstream 220753 23771648 ~ 23771966 (-)
G13311 NA non-coding downstream 238229 23753551 ~ 23754490 (-)
G13341 NA non-coding upstream 36686 24108652 ~ 24145236 (-)
LOC111193726 NA non-coding upstream 405752 24477718 ~ 24486728 (-)
G13390 NA non-coding upstream 592627 24664593 ~ 24665038 (-)
G13393 ccdc9,LOC107743647 non-coding upstream 635520 24707486 ~ 24712985 (-)
G13419 NA non-coding upstream 703842 24775808 ~ 24809071 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other downstream 83948 23904183 ~ 23908771 (-)
LOC103035686 kmt2a other downstream 139421 23784471 ~ 23853298 (-)
LOC111193708 NA other downstream 438749 23539257 ~ 23553970 (-)
G12767 NA other downstream 1997968 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 3017565 20975082 ~ 20975154 (-)
spcs2 spcs2,LOC107677086 other upstream 978994 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 1401768 25473734 ~ 25496958 (-)
LOC111193738 NA other upstream 1451821 25523787 ~ 25524603 (-)
G13677 rnf168 other upstream 1652947 25724913 ~ 25726156 (-)
nars2 nars2,LOC107670421,LOC107740380,LOC107724941,LOC107699825 other upstream 1930365 26002331 ~ 26016396 (-)

Expression


Co-expression Network