G13341


Basic Information

Item Value
gene id G13341
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24108652 ~ 24145236 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU17926
cagtggtaggatggtcccccctttaatgtgagtcttggtcctcccaaggtttcttcctcctcctgcagctctgagggagtttttcactgggggttctgtattctgtattttctatgtgtaatgttttgcctgattctttgtcctgtaatcatgtttctgtaaagctgctttgtgccaacacctgttgtaaaaagcgctatacaaataaatttgatttgatttgatttgattttgCAAAATACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17926 True 244 lncRNA 0.37 2 24108652 24145236

Neighbor

gene id symbol gene type direction distance location
nlrx1 nlrx1 coding downstream 161274 23928815 ~ 23947378 (-)
LOC103036322 LOC108439975 coding downstream 181276 23909411 ~ 23927376 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding downstream 213577 23859753 ~ 23895075 (-)
c1qtnf5 c1qtnf5 coding downstream 333336 23767027 ~ 23775316 (-)
LOC103035063 NA coding downstream 383884 23650417 ~ 23724768 (-)
brip1 NA coding upstream 422355 24567591 ~ 24687178 (-)
ppm1d ppm1d,LOC107548567,LOC107743648,LOC107664959,LOC107685067,LOC107723873,LOC107562958 coding upstream 544839 24690075 ~ 24699460 (-)
pgm2l1 pgm2l1,LOC107684026,LOC107677044 coding upstream 841830 24987066 ~ 25003911 (-)
LOC103033355 abcg1,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC108277612,LOC107677096 coding upstream 861756 25006992 ~ 25038802 (-)
rnf169 rnf169 coding upstream 917451 25062687 ~ 25072518 (-)
G13331 NA non-coding downstream 36686 23992719 ~ 24071966 (-)
G13330 NA non-coding downstream 119185 23988935 ~ 23989467 (-)
G13327 NA non-coding downstream 192364 23915713 ~ 23916288 (-)
G13325 NA non-coding downstream 205599 23896919 ~ 23903053 (-)
G13317 NA non-coding downstream 336686 23771648 ~ 23771966 (-)
LOC111193726 NA non-coding upstream 332482 24477718 ~ 24486728 (-)
G13390 NA non-coding upstream 519357 24664593 ~ 24665038 (-)
G13393 ccdc9,LOC107743647 non-coding upstream 562250 24707486 ~ 24712985 (-)
G13419 NA non-coding upstream 630572 24775808 ~ 24809071 (-)
G13427 NA non-coding upstream 823056 24968292 ~ 24968831 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other downstream 199881 23904183 ~ 23908771 (-)
LOC103035686 kmt2a other downstream 255354 23784471 ~ 23853298 (-)
LOC111193708 NA other downstream 554682 23539257 ~ 23553970 (-)
G12767 NA other downstream 2113901 21993807 ~ 21994751 (-)
trnak-cuu NA other downstream 3133498 20975082 ~ 20975154 (-)
spcs2 spcs2,LOC107677086 other upstream 905724 25050960 ~ 25056101 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 1328498 25473734 ~ 25496958 (-)
LOC111193738 NA other upstream 1378551 25523787 ~ 25524603 (-)
G13677 rnf168 other upstream 1579677 25724913 ~ 25726156 (-)
nars2 nars2,LOC107670421,LOC107740380,LOC107724941,LOC107699825 other upstream 1857095 26002331 ~ 26016396 (-)

Expression


Co-expression Network