G13445 (spcs2,LOC107677086)


Basic Information

Item Value
gene id G13445
gene name spcs2,LOC107677086
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25052513 ~ 25056103 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU18064
GGATGAAAGCTGCCAAGTGTGGTCTGGATCCATGCCAGCTGGGTCTTTTTGAACAGCCACGAGAAAGATGTTTTTCTCTTTGTAGGAGGTATACAAGGTTAGGATGCCCAtcattataaaaTATGAAATGACGCAACATGCCAGGACAGGCTTGGACTCTGGGAAAGGGTGCAGGTAATCCCAAACTAAAGCTACAATTGCAAAAAGGCAGGACACTGTGCAAATGAAGAGACGTCCATCCACAAGGTTGAAGTTCTCAACATACCCATACTTCTCAATGAGTACCTTCTTTGCTGCATCGTCAAGAGAATTTTTCACAGCTGCTCCATCCCATTTGTCAATTTTCACAGGTTTTTCATCAATCCTCCATTTTTCCAGCAACCCACTCTTCCCATTCTTTGCAGCCATCTTCTCTTCCTGGTCCGGACCTGTGACCTGgctctctctgattggctgctccgACACACGCAGCCGGGCGGAGGACCCCGGTCTGCCCGCGCTGCCTGATCTGCC

Function

symbol description
spcs2 Predicted to enable peptidase activity. Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to act upstream of or within proteolysis. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Orthologous to human SPCS2 (signal peptidase complex subunit 2).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF169-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18064 True 513 TUCP 0.36 4 25052513 25056103

Neighbor

gene id symbol gene type direction distance location
LOC103027752 NA coding upstream 70482 24980195 ~ 24982031 (+)
LOC103028424 LOC108425893 coding upstream 179387 24789276 ~ 24873126 (+)
kiaa0753 NA coding upstream 276052 24738891 ~ 24776461 (+)
tbx4 tbx4 coding upstream 493909 24519162 ~ 24558604 (+)
tbx2 tbx2,tbx2b,LOC107685069,LOC107757046 coding upstream 557056 24486822 ~ 24495457 (+)
lipt2 lipt2,LOC107677087 coding downstream 16199 25072302 ~ 25086749 (+)
LOC111194299 NA coding downstream 92174 25148277 ~ 25161641 (+)
eif4h eif4h,LOC107704308 coding downstream 312591 25368694 ~ 25378622 (+)
rffl rffl coding downstream 326058 25382161 ~ 25400864 (+)
LOC103043872 tfdp2,LOC108426935,LOC108277808,LOC107744026,LOC107704305,LOC107680101,LOC107720963 coding downstream 355183 25411286 ~ 25468689 (+)
G13458 NA non-coding upstream 3440 25047338 ~ 25049073 (+)
G13455 NA non-coding upstream 19137 25032901 ~ 25033376 (+)
G13214 NA non-coding upstream 326347 24723838 ~ 24726166 (+)
G13212 NA non-coding upstream 338550 24713326 ~ 24713963 (+)
G13197 NA non-coding upstream 364762 24647283 ~ 24687751 (+)
G13462 NA non-coding downstream 1890 25057993 ~ 25058489 (+)
G13491 NA non-coding downstream 63386 25119489 ~ 25120520 (+)
G13504 NA non-coding downstream 127202 25183305 ~ 25183545 (+)
G13514 NA non-coding downstream 174879 25230982 ~ 25231843 (+)
G13520 NA non-coding downstream 238366 25294469 ~ 25298227 (+)
G13237 NA other upstream 195491 24855933 ~ 24857022 (+)
ccdc9 ccdc9,LOC107548566,LOC107664938 other upstream 329837 24700842 ~ 24722676 (+)
G13067 NA other upstream 1197160 23853998 ~ 23855353 (+)
oaf oaf,oafa,LOC107696006,LOC107709135,LOC107586231,LOC107657251,LOC107717291 other upstream 2534733 22473652 ~ 22517780 (+)
spa17 spa17,LOC107709112,LOC107586300,LOC107657238,LOC107717271 other upstream 2667541 22300996 ~ 22384972 (+)
LOC103040166 LOC103040166,LOC108426893 other downstream 190893 25246996 ~ 25339435 (+)
LOC103045399 LOC108426937,LOC108277812 other downstream 505530 25561633 ~ 25642743 (+)
mfrp mfrp other downstream 604795 25660898 ~ 25673236 (+)
LOC103023549 gpr171 other downstream 732481 25788584 ~ 25795084 (+)
G14047 NA other downstream 1953445 27009548 ~ 27040529 (+)

Expression


Co-expression Network