G13524


Basic Information

Item Value
gene id G13524
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25294567 ~ 25298212 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU18159
gtgtgtctaatttgtagctccgcccctcgttacctgtctccccaggtgttcattgtttcatgtttagtataaatagtacctgttagtctacgtttgctgtcggtctttgcaccttcctctgtcgttttgtctcgccacgttagCTATTGTTTATTCACGGTTTCGTCACGCTctgcttgtttcttgtttatttctagttccctttatttcttgtatatttctagtcacgtttagttcttgtttgtttctttgtttattttgtatatatttacgtattattcctttgtatatattcccttaccttgttttgttattatctgtttagtttagcttagttctttgttggttttccctgtttgtttatgtatatagatattttcgttattcccctgttttgtttacttgtttatttgttatttaataaagtcatgtcttacccgtttaaacgtccgcctcccgtctcaccACGCGTTACA
>TU18160
gtgtgtctaatttgtagctccgcccctcgttacctgtctccccaggtgttcattgtttcatgtttagtataaatagtacctgttagtctacgtttgctgtcggtctttgcaccttcctctgtcgttttgtctcgccacgttagCTATTGTTTATTCACGGTTTCGTCACGCTctgcttgtttcttgtttatttctagttccctttatttcttgtatatttctagtcacgtttagttcttgtttgtttctttgtttattttgtatatatttacgtattattcctttgtatatattcccttaccttgttttgttattatctgtttagtttagcttagttctttgttggttttccctgtttgtttatgtatatagatattttcgttattcccctgttttgtttacttgtttatttgttatttaataaagtcatgtcttacccgtttaaacgtccgcctcccgtctcaccACGCGTTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18159 True 476 lncRNA 0.49 2 25294567 25298212
TU18160 False 476 lncRNA 0.36 2 25294567 25298212

Neighbor

gene id symbol gene type direction distance location
LOC111193727 NA coding downstream 68752 25219209 ~ 25225815 (-)
rnf169 rnf169 coding downstream 222049 25062687 ~ 25072518 (-)
LOC103033355 abcg1,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC108277612,LOC107677096 coding downstream 255765 25006992 ~ 25038802 (-)
pgm2l1 pgm2l1,LOC107684026,LOC107677044 coding downstream 290656 24987066 ~ 25003911 (-)
ppm1d ppm1d,LOC107548567,LOC107743648,LOC107664959,LOC107685067,LOC107723873,LOC107562958 coding downstream 595107 24690075 ~ 24699460 (-)
LOC103046310 NA coding upstream 345134 25643346 ~ 25660463 (-)
nudt8 nudt8 coding upstream 375660 25673872 ~ 25680956 (-)
maml2 maml2 coding upstream 530711 25828923 ~ 25905572 (-)
gab2 gab2,LOC107561751,LOC107593477 coding upstream 614387 25912599 ~ 25998864 (-)
tenm4 tenm4 coding upstream 750649 26048861 ~ 26299928 (-)
G13516 NA non-coding downstream 60597 25233691 ~ 25233970 (-)
G13515 NA non-coding downstream 62724 25230982 ~ 25231843 (-)
G13492 NA non-coding downstream 174091 25119847 ~ 25120476 (-)
G13483 NA non-coding downstream 210925 25076186 ~ 25083642 (-)
G13481 NA non-coding downstream 232503 25061710 ~ 25062064 (-)
G13537 NA non-coding upstream 58816 25357028 ~ 25357488 (-)
LOC111193731 NA non-coding upstream 61452 25359664 ~ 25360455 (-)
G13553 NA non-coding upstream 83982 25382194 ~ 25383387 (-)
G13628 tfdp2,LOC108426935,LOC107680101,LOC107704305,LOC107744026,LOC108277808,LOC107720963 non-coding upstream 113196 25411408 ~ 25468638 (-)
G13629 NA non-coding upstream 116320 25414532 ~ 25506044 (-)
spcs2 spcs2,LOC107677086 other downstream 238466 25050960 ~ 25056101 (-)
G13322 phykpl,LOC108439974,LOC108277665,LOC107585546,LOC107743705,LOC107683819 other downstream 1385796 23904183 ~ 23908771 (-)
LOC103035686 kmt2a other downstream 1441269 23784471 ~ 23853298 (-)
LOC111193708 NA other downstream 1740597 23539257 ~ 23553970 (-)
G12767 NA other downstream 3299816 21993807 ~ 21994751 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other upstream 175522 25473734 ~ 25496958 (-)
LOC111193738 NA other upstream 225575 25523787 ~ 25524603 (-)
G13677 rnf168 other upstream 426701 25724913 ~ 25726156 (-)
nars2 nars2,LOC107670421,LOC107740380,LOC107724941,LOC107699825 other upstream 704119 26002331 ~ 26016396 (-)
G13960 dscaml1 other upstream 1371907 26670119 ~ 26698793 (-)

Expression


Co-expression Network