fam109a (LOC108415891)


Basic Information

Item Value
gene id fam109a
gene name LOC108415891
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 26824856 ~ 26833613 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU18787
AGCGAGCGCCAGCAGCGCTGCAGGAGCAGGAGTAGGAGTGGGGATTTTACTGACGgtgatCACcgggcaggtgtgtgtgtgatggcgAGGTCTGGTGTGAGCAGGTGATATGTAGGGAGGACGCTGGACGAGTGTACAGGACTCGCCACCCAACTCTTCCTCCTGTAGTTGCGTCTCTGCGTGAGGGATGAAGCTGAACGAGCGGAGCGTGGCGCACTACGCCACCTGTAACTCTCCGCCGGATAAGACGGGCTTCCTGTGGAAGAAGGGCGAGCGTAATCCGTCGTATCACCGGCGCTGGTGTGTGTTGAAGGGAAACATGCTGTTTTATTTTGAGGAGCGCGAGAGCCGCGAGCCGGTGGGCGTGATCGTGATGGAGGgatgcaacaacaacaacaacaacaacaacaacaacaac
>XM_022677967.1
GCGGAACCCAAGCAGAGCGAGCGCCAGCAGCGCTGCAGGAGCAGGAGTAGGAGTGGGGATTTTACTGACGgtgatCACcgggcaggtgtgtgtgtgatggcgAGGTCTGGTGTGAGCAGGTGATATGTAGGGAGGACGCTGGACGAGTGTACAGGACTCGCCACCCAACTCTTCCTCCTGTAGTTGCGTCTCTGCGTGAGGGATGAAGCTGAACGAGCGGAGCGTGGCGCACTACGCCACCTGTAACTCTCCGCCGGATAAGACGGGCTTCCTGTGGAAGAAGGGCGAGCGTAATCCGTCGTATCACCGGCGCTGGTGTGTGTTGAAGGGAAACATGCTGTTTTATTTTGAGGAGCGCGAGAGCCGCGAGCCGGTGGGCGTGATCGTGATGGAGGgatctaagggaggtggtggaggaggaggtggaggacgCCTGAAGCCCGTCCTGTCGGGACCCCCCGCCCTGCAGGGACCCCAGGTCCCGCCCTCCGTTTCTCCTGAGGAGGGCTTCCTGTCGCTGGGCGTTCCCGGGAAGGAGAACGGCGTGTCCTGGAATAAACCCGCCGGGTTGGTGAACGGCGAGGGGGGCGTGTCCGGGGTGGTCTGGGAGACGGAGGGTCAGGGGGACTCGGCCAGACCCCCGCCCATCCCCCCGCGGAGGAAGACCCCCGGCGGGTCTCTGGAGAGCCCGGTGTCGCCCGAGACCGGCTGCTTCTCCAAACTGCACGACTGGTACGGGAGGGAGGTGGCGGAGCTGCGGGTGGAGTGGCTGCAGAGTCAGTGAGACGGGCGGGAGGAGGACGACGCCTTCACCGGGGACGCTGCGGGACCTGTCACTGCGGCACGCTGTCCGAATATAGCTCCGCCCCTGAATGTCTCCTATTGGCTGATGCACAGCGCATCGTACATGTGAATGTAGGGGTGGAGACCAAAGTGCAATTTCCTTTTTAAAGTTCAGGATCAGTTCACATTAAGTAATAAAGTCCCCTTTTGGCTTTCTACA

Function

NR:

description
PREDICTED: sesquipedalian-1-like

GO: NA

KEGG:

id description
K23791 PHETA; sesquipedalian

RNA

RNA id representative length rna type GC content exon number start site end site
TU18787 False 418 TUCP 0.57 3 26830021 26833598
XM_022677967.1 True 1003 mRNA 0.62 5 26824856 26833613

Neighbor

gene id symbol gene type direction distance location
sh2b3 NA coding downstream 6945 26773030 ~ 26817911 (-)
gak gak,LOC107667379 coding downstream 56755 26734608 ~ 26768101 (-)
LOC111188176 NA coding downstream 100686 26713008 ~ 26724170 (-)
tenm4 tenm4 coding downstream 524928 26048861 ~ 26299928 (-)
gab2 gab2,LOC107561751,LOC107593477 coding downstream 825992 25912599 ~ 25998864 (-)
LOC103042772 ddr2l,ddr1,LOC108444179,LOC107704361,LOC107550294,LOC107725118,LOC107667359,LOC107723312 coding upstream 1881 26835494 ~ 26859057 (-)
LOC103036237 NA coding upstream 51243 26884856 ~ 26886411 (-)
LOC103036549 NA coding upstream 81827 26915440 ~ 26921251 (-)
LOC111194248 LOC108444178,LOC106456176 coding upstream 99641 26933254 ~ 26936810 (-)
wdr31 wdr31,si:ch73-266o15.4,LOC107653158,LOC107667323 coding upstream 106230 26939843 ~ 26946203 (-)
G13963 NA non-coding downstream 146950 26676771 ~ 26677906 (-)
G13801 NA non-coding downstream 513106 26311435 ~ 26311750 (-)
G13769 NA non-coding downstream 848873 25971405 ~ 25975983 (-)
G13685 NA non-coding downstream 1066822 25755941 ~ 25758034 (-)
LOC111193737 NA non-coding downstream 1255333 25514715 ~ 25569523 (-)
G14112 NA non-coding upstream 104263 26937876 ~ 26962565 (-)
G14125 NA non-coding upstream 130029 26963642 ~ 26964693 (-)
G14130 NA non-coding upstream 211895 27045508 ~ 27046047 (-)
G14131 NA non-coding upstream 213256 27046869 ~ 27047115 (-)
G14128 NA non-coding upstream 277575 27111188 ~ 27125507 (-)
G13960 dscaml1 other downstream 126063 26670119 ~ 26698793 (-)
nars2 nars2,LOC107670421,LOC107740380,LOC107724941,LOC107699825 other downstream 808460 26002331 ~ 26016396 (-)
G13677 rnf168 other downstream 1098700 25724913 ~ 25726156 (-)
LOC111193738 NA other downstream 1300253 25523787 ~ 25524603 (-)
G13630 atp1b3b,LOC108277440,LOC107680094,LOC107704304,LOC107720962,LOC108426936,LOC107563006 other downstream 1327898 25473734 ~ 25496958 (-)
G14113 NA other upstream 65392 26899005 ~ 26902713 (-)
fam214b fam214b,LOC102776582,LOC107684984,LOC107595918,LOC107672624 other upstream 189882 27023495 ~ 27038746 (-)
carhsp1 carhsp1,LOC107733846,LOC107576530,LOC107738622,LOC107590589,LOC107690249 other upstream 1915921 28749534 ~ 28796458 (-)
emp2 emp2 other upstream 2779873 29613486 ~ 29643303 (-)
dexi dexi,LOC107590611 other upstream 2924074 29757687 ~ 29761252 (-)

Expression


Co-expression Network