G14112


Basic Information

Item Value
gene id G14112
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 26937876 ~ 26962565 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU18923
TTGCAGCCTGTATGAAAGACATACTGTCAGCGCTAACAGTGTGAACGAACACACAGCTGtgaaaagacacacacacacacacacctgcacacaaaATAGCGGATGACGTTAGCGTGACAGACGATGATCTCGTAGCTGTCCTCCTTCTGTTTGGGGTCGGCTCGGTGGATGTAGCGCCGGAAAGCCGCCTCGATGCGCGCGCCGTCCTCATGGTACTGCTAAAAGCGGCACAGAGGATCACACACAGTGGCACATataacacccacacacacacacacacaaacacacacacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacaaagtcgCTCTAAAGCTTGCACTGTTCTAACCAACAATTAAAAATCAAACttgtctcagtataaatatctGTGTACTGTTTTAATCAGGTATAAATGTATAAGCATTAGCTTATAAaatcagcagcatcagcataAACCACAAGTGCACTTTCAACAATTGCTAACTTCAATTTAGAGGCTGGTCTTGAATTAGTGGATATAAGTAGATATAACTGGAAGAGTTCCAGTAAAATTTTCAAGATCCGAGTTGAAATAGAAAGCAGACTAACTGATGCATCTTCAGACCCACACTAAGTGTGTGGCACAGGTGGGATACAGGTGTGGTAAAGGTGTGTATGAGCACTGACCACAGCCTCTGGTTTCCAGT
>TU18925
TTGCAGCCTGTATGAAAGACATACTGTCAGCGCTAACAGTGTGAACGAACACACAGCTGtgaaaagacacacacacacacacacctgcacacaaaATAGCGGATGACGTTAGCGTGACAGACGATGATCTCGTAGCTGTCCTCCTTCTGTTTGGGGTCGGCTCGGTGGATGTAGCGCCGGAAAGCCGCCTCGATGCGCGCGCCGTCCTCATGGTACTGCTAAAAGCGGCACAGAGGATCACACACAGTGGCACATataacacccacacacacacacacacaaacacacacacacacacacattcatgtaCTGAATCACTGTCTGAATGATCCTGCTGAGAATCACTGTGAGCCAAACCTGCACTAAACTCTTGAGTCAACCACCAAAAACACTGAGACTACTCACACAGGAGTCTGtttaaaactataatttaatgaacactgtttacactgttaaatatagatacagctctggaacaaaataagagagcacttaaagaATGGTGAATTGAAatgataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcaaaaaaaaactgtgatttaaaaccagggttatttttttttttaccagatattgatttctgaactcttaaaactttatgaatatgaacttgtttttttttttttgcattatttgagatctgaaagctctgcagcttttttcagtcatttcagccatttctcattttctgcaaataaatgacaatatttttattttgaatgtgGGAGaaacataaacttataaatagcaaaatcagagaaactgattcagaaactgaagtggtcttttaattttttccagagctgtatatgtatgtataaaaaagCATCATttataactttacattacaaataGAAACATCTGGTAGATAGATCTGAATTTTTGAAATGCTCTAGACTAGTATATATAAAAGCTCAGGCCACACAAATGGTATTTTCTATAGAAAGATTCAGAACTCTGTAAGCATGAACGACTGAGTAACATCAGGCTAATTTCTCTGATGTATGATTTCTACAGCAGACTGAATGTTCAGCTGATTTTATGTGAAACCTGTGAAGCATCTGCTTGTAAATATTTAGAAAACACACCAAAGAACAGTACACACTATGTATGCAAATTTGCAGAGTTCCAGCGCTGGATAAGCGGGATTTCCAGCTCGTTTTTGGGGAAATGTAGACACGGAATGATTCAGCGCAGGCTGggttttgtttatctgtttgtttgcGTAAACTGCGGTAGCGTTAGCATAGCTCAAtctttgcatctttttaaaTCTTTGCATACTGACAACTGATGCACACGTTCGGCACCACAAGCACGGAAAGAACCCAAACACAGGCCTACGTGCAGAGACACAGTCCACCCCCACACTGCCGCACACTGTAGCGCTGCAGCTAAGTGCTAACGGGGAAGTGGAAACTGTGGAGGAAACCCCTTTTTACTTGCCTGTATCTGTTacacaggtgtaaaaacactgaCTTGTTAGATCCGCTCTACTTATACAAAAACGCCATTAGCATAGCTAAAAATAATAGTTAGCATGTAGCCAATTAGCATTTTGTCTCTACTGTCGTCGGTTTTCCAGGTTAACAGTAGGTTAAACAGGGTTAGCAGTGAGGGGTCAGGATGCTAATTGAAgggttttagctttagctttcaaTGTTTTGTAACTCTGAGGTAAAACTAAACGTTTACTAGATTTTTTGCAGTGATTAGCCAAATTCTGTTGACTTTTTAATTCTTGTTGGCTCTGATTTGTGTTGCTAATGCACTAAGTTGTCATCCAGGACCaaatttattaaagtttttaattttttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18923 False 716 lncRNA 0.38 2 26961726 26962565
TU18925 True 1870 lncRNA 0.44 2 26937876 26962565

Neighbor

gene id symbol gene type direction distance location
LOC111194248 LOC108444178,LOC106456176 coding downstream 1066 26933254 ~ 26936810 (-)
LOC103036549 NA coding downstream 16625 26915440 ~ 26921251 (-)
LOC103036237 NA coding downstream 51465 26884856 ~ 26886411 (-)
LOC103042772 ddr2l,ddr1,LOC108444179,LOC107704361,LOC107550294,LOC107725118,LOC107667359,LOC107723312 coding downstream 78819 26835494 ~ 26859057 (-)
sh2b3 NA coding downstream 119965 26773030 ~ 26817911 (-)
ankle2 ankle2,LOC102797792,LOC102795364 coding upstream 9687 26972252 ~ 26982609 (-)
golga3 golga3 coding upstream 21319 26983884 ~ 27007880 (-)
ranbp1 ranbp1,LOC107752129,LOC107684983 coding upstream 46982 27009547 ~ 27019342 (-)
LOC103032722 LOC107690236,LOC108276491,LOC107733827 coding upstream 166033 27128598 ~ 27319845 (-)
LOC111193779 LOC108436637 coding upstream 447314 27409879 ~ 27507368 (-)
G13963 NA non-coding downstream 259970 26676771 ~ 26677906 (-)
G13801 NA non-coding downstream 626126 26311435 ~ 26311750 (-)
G13769 NA non-coding downstream 961893 25971405 ~ 25975983 (-)
G13685 NA non-coding downstream 1179842 25755941 ~ 25758034 (-)
LOC111193737 NA non-coding downstream 1368353 25514715 ~ 25569523 (-)
G14125 NA non-coding upstream 1077 26963642 ~ 26964693 (-)
G14130 NA non-coding upstream 82943 27045508 ~ 27046047 (-)
G14131 NA non-coding upstream 84304 27046869 ~ 27047115 (-)
G14128 NA non-coding upstream 148623 27111188 ~ 27125507 (-)
G14152 NA non-coding upstream 464237 27426802 ~ 27430492 (-)
G14113 NA other downstream 35163 26899005 ~ 26902713 (-)
fam109a LOC108415891 other downstream 104263 26824856 ~ 26833613 (-)
G13960 dscaml1 other downstream 239083 26670119 ~ 26698793 (-)
nars2 nars2,LOC107670421,LOC107740380,LOC107724941,LOC107699825 other downstream 921480 26002331 ~ 26016396 (-)
G13677 rnf168 other downstream 1211720 25724913 ~ 25726156 (-)
fam214b fam214b,LOC102776582,LOC107684984,LOC107595918,LOC107672624 other upstream 60930 27023495 ~ 27038746 (-)
carhsp1 carhsp1,LOC107733846,LOC107576530,LOC107738622,LOC107590589,LOC107690249 other upstream 1786969 28749534 ~ 28796458 (-)
emp2 emp2 other upstream 2650921 29613486 ~ 29643303 (-)
dexi dexi,LOC107590611 other upstream 2795122 29757687 ~ 29761252 (-)
LOC111193878 NA other upstream 2926234 29888799 ~ 29892305 (-)

Expression


Co-expression Network