G14415


Basic Information

Item Value
gene id G14415
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 28899353 ~ 28900100 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU19337
tcacgggccacagactctgtaataaaaaaataatgaaatataccactttaaataatacattttcctgattatttcatttacacaccattttacttgacttactatctttatctttgacagtgttgtgtaaactaagatttttcaaattgatgtttaacttcatgatgtctcttaatattaaactccttaattacggcaacttttagactctttggcccgtttttctgtgctagaaatgcacaccctctccacttttagactctttggcccgtttttctgtgctagaaatgcacactctctccgcttttagactctttggtccgtttttctgtgctagaaatgcgcaccctctccgcttttagactctttggcccgtttttctgtgctagaaatgcacactctctccgcttttagactctttggcccgtttttctgtgctagaaatgcgcaccctctccgcttttagactctttggtccgtttctgacacctagcgttcaaactttgaatctcacattataaaaacttgcttaacagcggg
>TU19338
tcacgggccacagactctgtaataaaaaaataatgaaatataccactttaaataatacattttcctgattatttcatttacacaccattttacttgacttactatctttatctttgacagtgttgtgtaaactaagatttttcaaattgatgtttaacttcatgatgtctcttaatattaaactccttaattacggcaacttttagactctttggcccgtttttctgtgctagaaatgcacaccctctccacttttagactctttggcccgtttttctgtgctagaaatgcacactctctccgcttttagactctttggtccgtttttctgtgctagaaatgcacactctctccgcttttagactctttggcccgtttttctgtgctagaaatgcgcaccctctccgcttttagactctttggtccgtttctgacacctagcgttcaaactttgaatctcacattataaaaacttgcttaacagcggg

Function

NR:

description
NACHT domain- and WD repeat-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19337 True 540 lncRNA 0.39 2 28899353 28900100
TU19338 False 488 lncRNA 0.38 3 28899353 28900100

Neighbor

gene id symbol gene type direction distance location
eci1 NA coding downstream 69839 28821968 ~ 28829514 (-)
naa60 naa60,nat15,LOC107690248,LOC107568044,LOC107685925 coding downstream 87229 28802090 ~ 28812124 (-)
tmem114 tmem114 coding downstream 237051 28633776 ~ 28662302 (-)
LOC103034330 sept12,LOC107733855,LOC107568113,LOC107690244,LOC107738615 coding downstream 874552 27852176 ~ 28024801 (-)
LOC103033698 LOC108436663,LOC108256318,LOC105900006,LOC106596483,LOC107738612 coding downstream 1270107 27604572 ~ 27629246 (-)
clcn7 clcn7,LOC107738625,LOC107590582,LOC107685922,LOC107733862,LOC107690253,LOC107568008 coding upstream 4961 28905061 ~ 28933768 (-)
ptx4 NA coding upstream 34526 28934626 ~ 28943090 (-)
usp7 usp7 coding upstream 66385 28966485 ~ 28995105 (-)
grin2a grin2a,LOC107690256,LOC107685916,LOC107568390 coding upstream 411310 29311410 ~ 29583262 (-)
socs1 socs1 coding upstream 977941 29878041 ~ 29880914 (-)
LOC111193842 NA non-coding downstream 83475 28813041 ~ 28815878 (-)
G14394 NA non-coding downstream 184070 28697362 ~ 28715283 (-)
G14339 NA non-coding downstream 268539 28630590 ~ 28630814 (-)
G14333 NA non-coding downstream 348649 28550453 ~ 28550704 (-)
G14330 rbfox1 non-coding downstream 362163 28519571 ~ 28537190 (-)
G14412 NA non-coding upstream 3661 28903761 ~ 28924250 (-)
G14417 NA non-coding upstream 50645 28950745 ~ 28951228 (-)
G14420 NA non-coding upstream 60241 28960341 ~ 28963827 (-)
G14425 cunh16orf72,LOC103025273,LOC105900007,LOC107685917 non-coding upstream 106932 29007032 ~ 29011028 (-)
G14430 NA non-coding upstream 164224 29064324 ~ 29064730 (-)
carhsp1 carhsp1,LOC107733846,LOC107576530,LOC107738622,LOC107590589,LOC107690249 other downstream 102895 28749534 ~ 28796458 (-)
fam214b fam214b,LOC102776582,LOC107684984,LOC107595918,LOC107672624 other downstream 1860607 27023495 ~ 27038746 (-)
G14113 NA other downstream 1996640 26899005 ~ 26902713 (-)
fam109a LOC108415891 other downstream 2065740 26824856 ~ 26833613 (-)
G13960 dscaml1 other downstream 2200560 26670119 ~ 26698793 (-)
emp2 emp2 other upstream 713386 29613486 ~ 29643303 (-)
dexi dexi,LOC107590611 other upstream 857587 29757687 ~ 29761252 (-)
LOC111193878 NA other upstream 988699 29888799 ~ 29892305 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other upstream 1360918 30261018 ~ 30268350 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other upstream 1773960 30674060 ~ 30725921 (-)

Expression


Co-expression Network