G14517


Basic Information

Item Value
gene id G14517
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29302247 ~ 29304708 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU19493
GCAAACATAatcttacattaaattaaaagtctAAGCCTAACACTAGTCAACCATATATAATTTGAAATATGTTGCTAGCAGACTTTAGCTAaaatcaacctaaacttaaaattagaAATCTAAACTAGAGGAAACCTTAGCtaacttaaaaatgtactgCTAGCATATGTTTGCTAACATCAACCTTAACTTTAAGTCTAAATTTAACGTATATTTAGCAATCCTAAGGCAACAATAACCTTAACATTAAATCTAAGTCTACAGGTAATATAGACATTTAGTGTATTAAGGAGGACTATCCAAACAATGCAGAACTGAGCACTCTGCCTGATGACGAGCGGACGATTCATACTCTACGTTTTTAGTGTGTGCTAATTtacgtgtttttttatttattttatttccgtTGTGAAAAAGTTCTTTCAGGGGGATTTTGACCGAAAGTGACTTAAGTAAGTAGCATCTCTGCGAGAagtgttctttatttatttatttatttaaatattatttttgtatttattattattatttattaatttatgtatttattttttacatttgtgttGCATGAATATGTACACATTGCTGCTGGAATACTGGAATACTTGCACTCGGGTAAAGGAGCTATGCCTTTCGgtactgtgtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccttgggaTGGGGAGAGAGGCCCTGTTTGAAGCAAATCacttgtgtttcctgtttaatAATCTCAATCACTCTTGTGTACTTTTGCATTCATATttcatgtgtttaaaaaaagtagaacTTATTTAGGACAGTGTTTTATACTCGGGGGTGGGGCAAGGGTGTCATTCATGTGACTATGTATAATTTATCACTTAAACCATGTGACCTgcctatgtttttatttatttatttattttttttttttttttttttt

Function

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG:

id description
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU19493 True 930 lncRNA 0.30 2 29302247 29304708

Neighbor

gene id symbol gene type direction distance location
usp7 usp7 coding downstream 307142 28966485 ~ 28995105 (-)
ptx4 NA coding downstream 359157 28934626 ~ 28943090 (-)
clcn7 clcn7,LOC107738625,LOC107590582,LOC107685922,LOC107733862,LOC107690253,LOC107568008 coding downstream 368479 28905061 ~ 28933768 (-)
eci1 NA coding downstream 472733 28821968 ~ 28829514 (-)
naa60 naa60,nat15,LOC107690248,LOC107568044,LOC107685925 coding downstream 490123 28802090 ~ 28812124 (-)
grin2a grin2a,LOC107690256,LOC107685916,LOC107568390 coding upstream 6702 29311410 ~ 29583262 (-)
socs1 socs1 coding upstream 573333 29878041 ~ 29880914 (-)
tmc5 tmc5 coding upstream 637715 29942423 ~ 29960792 (-)
LOC103032739 NA coding upstream 1577396 30882104 ~ 30884340 (-)
LOC103033392 NA coding upstream 1632578 30937286 ~ 30945392 (-)
G14466 NA non-coding downstream 16548 29285363 ~ 29285699 (-)
G14458 NA non-coding downstream 44579 29257426 ~ 29257668 (-)
G14456 NA non-coding downstream 67624 29234399 ~ 29234623 (-)
G14455 NA non-coding downstream 73752 29228290 ~ 29228495 (-)
G14453 NA non-coding downstream 103497 29198549 ~ 29198750 (-)
G14523 NA non-coding upstream 90452 29395160 ~ 29398166 (-)
G14522 NA non-coding upstream 91208 29395916 ~ 29399091 (-)
G14525 NA non-coding upstream 95307 29400015 ~ 29401359 (-)
G14526 NA non-coding upstream 100451 29405159 ~ 29422855 (-)
G14534 NA non-coding upstream 257090 29561798 ~ 29611474 (-)
carhsp1 carhsp1,LOC107733846,LOC107576530,LOC107738622,LOC107590589,LOC107690249 other downstream 505789 28749534 ~ 28796458 (-)
fam214b fam214b,LOC102776582,LOC107684984,LOC107595918,LOC107672624 other downstream 2263501 27023495 ~ 27038746 (-)
G14113 NA other downstream 2399534 26899005 ~ 26902713 (-)
fam109a LOC108415891 other downstream 2468634 26824856 ~ 26833613 (-)
G13960 dscaml1 other downstream 2603454 26670119 ~ 26698793 (-)
emp2 emp2 other upstream 308778 29613486 ~ 29643303 (-)
dexi dexi,LOC107590611 other upstream 452979 29757687 ~ 29761252 (-)
LOC111193878 NA other upstream 584091 29888799 ~ 29892305 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other upstream 956310 30261018 ~ 30268350 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other upstream 1369352 30674060 ~ 30725921 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_00743257_00745220 NA coding CI01000069 null 743182 ~ 746071 (+)