emp2 (emp2)


Basic Information

Item Value
gene id emp2
gene name emp2
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29613486 ~ 29643303 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU19514
CCGCTCCATCCTCAGAGCAGCTCAGTGTTAAATTGCAGGCCACACCCTGCAGGGCGCCGGGCCGAGTGACCGGGCGGGGGGCGTGGCCTGCACTGCCCCTCCCTCCACTACTACAGCTCCTGCCTGCAGTCACGTTTAGCTGCTACATCACGCTGCCGGACTCTTCCTCCTGCTGCTCCGCGGTTTGACCTCTCTTCGACCTTTTGACCTCCTGTTCCAGTGTCAGCCATGTTGGTGATCTTGGCCTTCATCATCCTCTTCCACATCATTTCAGCAATACTGCTCTTCATAGCAACTACTAACAGTGCTTGGTGGGTTGCTAAAGCAGGGAACTTCTACACTGACCTGTGGTACAGCTGCAACGTCACCTGTGTCGATATACCAAACAGTGCAGCCAAAGATTCGGGTTACCTTCAGACTATTCAGGCTACCATGATCCTGGCCACCATCCTGTGCTGCGTAggcttcttcgtcttcttcctGCAGCTCTTCCGTTTGAAGCAGGGAGAGAGATTCGTCTTCACGGCCATCATTCAGCTCCTGTCTTCTCTGTGCGTGATGGTCGGCGCCTCCATCTACACAGCCGAGCGGACGAGCTTCCAGACGACGCCCGTGCAGGAGGGCGATTACGGCTACGCCTTCGTGGTGGCCTGGGTGGCGTTCCCCATGACCCTCATCAGCGGCCTGATGTATCTAGTGCTGAGGAAACG
>XM_022676002.1
GAGTGACCGGGCGGGGGGCGTGGCCTGCACTGCCCCTCCCTCCACTACTACAGCTCCTGCCTGCAGTCACGTTTAGCTGCTACATCACGCTGCCGGACTCTTCCTCCTGCTGCTCCGCGGTTTGACCTCTCTTCGACCTTTTGACCTCCTGTTCCAGTGTCAGCCATGTTGGTGATCTTGGCCTTCATCATCCTCTTCCACATCATTTCAGCAATACTGCTCTTCATAGCAACTACTAACAGTGCTTGGTGGGTTGCTAAAGCAGGGAACTTCTACACTGACCTGTGGTACAGCTGCAACGTCACCTGTGTCGATATACCAAACAGTGCAGCCAAAGATTCGGGTTACCTTCAGACTATTCAGGCTACCATGATCCTGGCCACCATCCTGTGCTGCGTAggcttcttcgtcttcttcctGCAGCTCTTCCGTTTGAAGCAGGGAGAGAGATTCGTCTTCACGGCCATCATTCAGCTCCTGTCTTCTCTGTGCGTGATGGTCGGCGCCTCCATCTACACAGCCGAGCGGACGAGCTTCCAGACGACGCCCGTGCAGGAGGGCGATTACGGCTACGCCTTCGTGGTGGCCTGGGTGGCGTTCCCCATGACCCTCATCAGCGGCCTGATGTATCTAGTGCTGAGGAAACGCAAGTAGATGAAGTTCACAACAGCCGACCTCACCAGCTGCCACCAGCTACAGCCTTTAGCCAAGagaatttattttgtaaatattctttttttttttttttttttttttcgtttatttgtttgttt

Function

symbol description
emp2 Involved in regulation of glomerular filtration. Predicted to be located in cytoplasm and nucleus. Predicted to be active in plasma membrane. Is expressed in blood vessel; orbit; pectoral fin; pharyngeal arch; and pronephros. Human ortholog(s) of this gene implicated in nephrotic syndrome type 10. Orthologous to human EMP2 (epithelial membrane protein 2).

NR:

description
epithelial membrane protein 2-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19514 False 710 TUCP 0.52 5 29613612 29643303
XM_022676002.1 True 773 mRNA 0.52 5 29613486 29643240

Neighbor

gene id symbol gene type direction distance location
grin2a grin2a,LOC107690256,LOC107685916,LOC107568390 coding downstream 30224 29311410 ~ 29583262 (-)
usp7 usp7 coding downstream 618381 28966485 ~ 28995105 (-)
ptx4 NA coding downstream 670396 28934626 ~ 28943090 (-)
clcn7 clcn7,LOC107738625,LOC107590582,LOC107685922,LOC107733862,LOC107690253,LOC107568008 coding downstream 679718 28905061 ~ 28933768 (-)
eci1 NA coding downstream 783972 28821968 ~ 28829514 (-)
socs1 socs1 coding upstream 234738 29878041 ~ 29880914 (-)
tmc5 tmc5 coding upstream 299120 29942423 ~ 29960792 (-)
LOC103032739 NA coding upstream 1238801 30882104 ~ 30884340 (-)
LOC103033392 NA coding upstream 1293983 30937286 ~ 30945392 (-)
LOC111193890 NA coding upstream 1303462 30946765 ~ 30954116 (-)
G14534 NA non-coding downstream 2012 29561798 ~ 29611474 (-)
G14541 NA non-coding downstream 13192 29593804 ~ 29600294 (-)
G14526 NA non-coding downstream 190631 29405159 ~ 29422855 (-)
G14525 NA non-coding downstream 212127 29400015 ~ 29401359 (-)
G14522 NA non-coding downstream 214395 29395916 ~ 29399091 (-)
G14567 NA non-coding upstream 125603 29768906 ~ 29773096 (-)
G14578 NA non-coding upstream 192014 29835317 ~ 29862563 (-)
G14620 NA non-coding upstream 395181 30038484 ~ 30038708 (-)
G14660 NA non-coding upstream 502151 30145454 ~ 30229401 (-)
G14670 xylt1,LOC108439755,LOC107567884,LOC107733871,LOC107729195 non-coding upstream 574520 30217823 ~ 30221528 (-)
carhsp1 carhsp1,LOC107733846,LOC107576530,LOC107738622,LOC107590589,LOC107690249 other downstream 817028 28749534 ~ 28796458 (-)
fam214b fam214b,LOC102776582,LOC107684984,LOC107595918,LOC107672624 other downstream 2574740 27023495 ~ 27038746 (-)
G14113 NA other downstream 2710773 26899005 ~ 26902713 (-)
fam109a LOC108415891 other downstream 2779873 26824856 ~ 26833613 (-)
G13960 dscaml1 other downstream 2914693 26670119 ~ 26698793 (-)
dexi dexi,LOC107590611 other upstream 114384 29757687 ~ 29761252 (-)
LOC111193878 NA other upstream 245496 29888799 ~ 29892305 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other upstream 617715 30261018 ~ 30268350 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other upstream 1030757 30674060 ~ 30725921 (-)
LOC103045124 NA other upstream 1246303 30889606 ~ 30892648 (-)

Expression


Co-expression Network