LOC111193878


Basic Information

Item Value
gene id LOC111193878
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 29888799 ~ 29892305 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU19597
tttttttaaatggtcctGTATATTGCTTATTCTCTCATTTTGATACAGTTGATAACCTGTCAAAATTAAGCCCAGGGGTGTCCAGTTTATATGTACAGTTCTGGTATGGTGGCAGGTTTTTGCTAAACAATGAGCAGCAAAAACTGACCAAATAATTCAACAAGTGTAATCAGATTTCAAACAGCAGATGACTAGCATCTATTTGGCTTGaataaaaacctgcagccacaccagCCCTTTGCATATAAAATTGGACACCCCTCATTTAGCCTGATGTTttgactgatttattttttaatgtgtagATTGTCTTTGAAGACAGTGTACCAGTGGACATTGCAGTGGCAGAGTGCTCCTGTGTGGCTGGGACAGCCCTCTGCAACCACAATGTTGCACTACTGTTCCAGACTGCGCACTACTCCACACTGAACCTGGCTGCTGTACCCCCAGTCCTAAGCTGCACAGAAACAGAACAACGCTGGCACAAGCCAAGAACCATGGGTGTAAAACCAGGCCGCGTGAGTGACATGGTGTTCTTATCCTCCAAGCCAAAGCAGTTTACAGTTGCTGATGGTGTAAGGAGTAAACGTTACAAGGCAGTGCGAGGGGAGCTGCCAGATCCAGATGTCCTTAAAGTTGATGAGCAGTACCAGGACTTCACTGCAGACATCGCTCCACTCATCACCACCATGGCCATAAGTGCAGATGTCCCGCTGGTTGATTCAGCTTTTGGGAAAGTCCAGGCGGGTAGCCCCATCTCCTACCAGCATCCAGTACCAGTGAGCCGGGTTGTTGTACGCCATCCAGATGCCCCTCTGCCACCACCTTTACCTGTAGACGGTTATAGGCTGGAGCCTACTAACTGCCAGTTTGTGTGCACTCACCAACAACACCTCCATCTGCAGTCACTTGCCACTACATTTGACATGGCAAGGAAAATAGAGGTTGCCACCAGGGAGCAGAGCAACTCTGTGGAGTGGCACCGAGTCAGGAGGCCAAGAATAACTTCCTCCCGATTCAGGGAAATATGCCATGTCAGAGGTCAGAGTTCTGCAGAAATCCTGTCACAAAGGATTCGAAAGGGAGTGGATCAAACTGCTGCAATGAAGAGGGGATTGGCACTGGAC
>XM_022676078.1
GGATGACGTGTAACTAGTTCCGGTTTTTTGAGGGTGCGTGTGTATAGTTCCGCTCCGGTACACAGGATAGACGCGCAGAAGTGAAGATGGCTGTGTTTTACACGAGGTGCCTCCAAGACCTTCCGAAAATTACCATCACGGATGTACACCGGATAGTCCAAGCGGCCAGCTCAACCCCGAGGAGCAAAAGGGAGAAAGGATATAAGATGTATATATCCAGTTACATCGACAACTATGAAGATTGTCTTTGAAGACAGTGTACCAGTGGACATTGCAGTGGCAGAGTGCTCCTGTGTGGCTGGGACAGCCCTCTGCAACCACAATGTTGCACTACTGTTCCAGACTGCGCACTACTCCACACTGAACCTGGCTGCTGTACCCCCAGTCCTAAGCTGCACAGAAACAGAACAACGCTGGCACAAGCCAAGAACCATGGGTGTAAAACCAGGCCGCGTGAGTGACATGGTGTTCTTATCCTCCAAGCCAAAGCAGTTTACAGTTGCTGATGGTGTAAGGAGTAAACGTTACAAGGCAGTGCGAGGGGAGCTGCCAGATCCAGATGTCCTTAAAGTTGATGAGCAGTACCAGGACTTCACTGCAGACATCGCTCCACTCATCACCACCATGGCCATAAGTGCAGATGTCCCGCTGGTTGATTCAGCTTTTGGGAAAGTCCAGGCGGGTAGCCCCATCTCCTACCAGCATCCAGTACCAGTGAGCCGGGTTGTTGTACGCCATCCAGATGCCCCTCTGCCACCACCTTTACCTGTAGACGGTTATAGGCTGGAGCCTACTAACTGCCAGTTTGTGTGCACTCACCAACAACACCTCCATCTGCAGTCACTTGCCACTACATTTGACATGGCAAGGAAAATAGAGGTTGCCACCAGGGAGCAGAGCAACTCTGTGGAGTGGCACCGAGTCAGGAGGCCAAGAATAACTTCCTCCCGATTCAGGGAAATATGCCATGTCAGAGGTCAGAGTTCTGCAGAAATCCTGTCACAAAGGATTCGAAAGGGAGTGGATCAAACTGCTGCAATGAAGAGGGGATTGGCACTGGACGCTGCTCCGATTCTGGCCCACAGCCAGACAGGGCGGAGCCTACTGGACATGACGGCATGAGAATGaggtctctcagccaatcaggtggcgagctCGGCCAGCTGAGAGGCTAAGGAAGAGAGATGCTTGGCCATAGATACTTTATCTAATAGATTTTCCACTGAGCAGAACAAccgctcttaaagagacagtgcggatttctgtttgtatatgagtagaccacacaaaaacccagagtttactgcaaaatgagttataaaagtggtattttttattcttataaagtttccagtcctttggagaaagaaaagaccatTACTGGTTCAAATCACTATAACTTCTAACCAGTAATAGGTAgcagtttaaaattttatatgatgattgtaaacacattatagtaaaatatagagtTGTCAAAACCcttcatccatataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19597 False 1127 TUCP 0.48 3 29889235 29890576
XM_022676078.1 True 1498 mRNA 0.48 4 29888799 29892305

Neighbor

gene id symbol gene type direction distance location
socs1 socs1 coding downstream 7885 29878041 ~ 29880914 (-)
grin2a grin2a,LOC107690256,LOC107685916,LOC107568390 coding downstream 305537 29311410 ~ 29583262 (-)
usp7 usp7 coding downstream 893694 28966485 ~ 28995105 (-)
ptx4 NA coding downstream 945709 28934626 ~ 28943090 (-)
clcn7 clcn7,LOC107738625,LOC107590582,LOC107685922,LOC107733862,LOC107690253,LOC107568008 coding downstream 955031 28905061 ~ 28933768 (-)
tmc5 tmc5 coding upstream 50118 29942423 ~ 29960792 (-)
LOC103032739 NA coding upstream 989799 30882104 ~ 30884340 (-)
LOC103033392 NA coding upstream 1044981 30937286 ~ 30945392 (-)
LOC111193890 NA coding upstream 1054460 30946765 ~ 30954116 (-)
LOC103046043 NA coding upstream 1063888 30956193 ~ 30962532 (-)
G14578 NA non-coding downstream 26236 29835317 ~ 29862563 (-)
G14567 NA non-coding downstream 115703 29768906 ~ 29773096 (-)
G14534 NA non-coding downstream 277325 29561798 ~ 29611474 (-)
G14541 NA non-coding downstream 288505 29593804 ~ 29600294 (-)
G14526 NA non-coding downstream 465944 29405159 ~ 29422855 (-)
G14620 NA non-coding upstream 146179 30038484 ~ 30038708 (-)
G14660 NA non-coding upstream 253149 30145454 ~ 30229401 (-)
G14670 xylt1,LOC108439755,LOC107567884,LOC107733871,LOC107729195 non-coding upstream 325518 30217823 ~ 30221528 (-)
G14672 NA non-coding upstream 366113 30258418 ~ 30258877 (-)
G14694 NA non-coding upstream 531767 30424072 ~ 30424287 (-)
dexi dexi,LOC107590611 other downstream 127547 29757687 ~ 29761252 (-)
emp2 emp2 other downstream 245496 29613486 ~ 29643303 (-)
carhsp1 carhsp1,LOC107733846,LOC107576530,LOC107738622,LOC107590589,LOC107690249 other downstream 1092341 28749534 ~ 28796458 (-)
fam214b fam214b,LOC102776582,LOC107684984,LOC107595918,LOC107672624 other downstream 2850053 27023495 ~ 27038746 (-)
G14113 NA other downstream 2986086 26899005 ~ 26902713 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other upstream 368713 30261018 ~ 30268350 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other upstream 781755 30674060 ~ 30725921 (-)
LOC103045124 NA other upstream 997301 30889606 ~ 30892648 (-)
G14781 LOC107602351 other upstream 1022605 30914910 ~ 30923249 (-)
trnap-agg_1 NA other upstream 1031507 30923812 ~ 30924087 (-)

Expression


Co-expression Network