G14660


Basic Information

Item Value
gene id G14660
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 30145454 ~ 30229401 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU19670
AATTCCAAAAAATTCAgtttgaaaaaagagagagcgacaCAGAGCAGTAATACAGAAGGCATTTACACCAGCAGAGAGATGACTTTCATTATCgtttcagttttctttttattctcttaTGTAGAGAAATAAAGATAAGAGTTGATGTTTGAAGTCTGATGATGTCTTGATGAAGGAAAAAGCTAAGGCACGCTGGTCTCCTCCTGCCGGAGAGAGAGCCGGAGAGTCCGGAGCAAATTGTGCAACACGTCGGCCCAACAGCAAGAAACGTGAGATTTCAGTACAGAACAGAACAATCTGCCGCGAGATCCAGGAGATCCAGGATAACAGGAGATCCAGAAGATTCTCAGAAAGGCAAAATGATCATGTTTCAGCtcaaaataaagcaataaaataaaataaaaaacaataaaataaaacaaatcatcaCACAGTCAGACAGCACAGTTTCAGCACACTGACCTCTCGCGCCGACCTCCCGAACACttcctttaattaatttaaccttatttatatttacagtacttTAAAAACATCTGTCCGTTACAAAATACTTTACATCATCCTCCTCCCTACCAAAATAGCTGTAGTACAGAAGACGTGTCGGAAATCGAGAAACACTATTAAATAATACGCTTCCGTGTGATGCTCATCAGAGCGATCGCTGAAAACGTCGTCGACGAGGGGCGTGGCCATCATCCACCCACCTTAAAGATAACCcaaccccaacccccccccatTTAAAGTTCCTAAAGTAAAGTAATTGTGCAGTGTTTACAGTTCAGCATACTTCCAGCCcaacacagacagacatacagaccaGAAAGAAATACTACTGTAGTGTAACTCCTCCCCCTTccccttatacacacacacacacacacacacaaata
>TU19671
tacacacacacacacacacacaaatatagagaaaaaagaaattcaGTTAGgtcaaatttatatttatacttagAATCTAATGCAGTTAGACAGTTGCGCCACCCAAGGGCTATACAACTGAATGCATTTCGAATGCTTTGTCTTAGAAATaacgaaaaataaaaatacagctctggaaaaaattaagagatcactttagtttctgaatcagtttctctctgattttgctatttataggtttatatttgagtaaaatgaacattgttgttttattct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19670 True 893 lncRNA 0.41 2 30145454 30225112
TU19671 False 276 lncRNA 0.30 3 30185816 30229401

Neighbor

gene id symbol gene type direction distance location
tmc5 tmc5 coding downstream 184662 29942423 ~ 29960792 (-)
socs1 socs1 coding downstream 264540 29878041 ~ 29880914 (-)
grin2a grin2a,LOC107690256,LOC107685916,LOC107568390 coding downstream 562192 29311410 ~ 29583262 (-)
usp7 usp7 coding downstream 1150349 28966485 ~ 28995105 (-)
ptx4 NA coding downstream 1202364 28934626 ~ 28943090 (-)
LOC103032739 NA coding upstream 652703 30882104 ~ 30884340 (-)
LOC103033392 NA coding upstream 707885 30937286 ~ 30945392 (-)
LOC111193890 NA coding upstream 717364 30946765 ~ 30954116 (-)
LOC103046043 NA coding upstream 726792 30956193 ~ 30962532 (-)
LOC111193897 LOC108413061 coding upstream 735147 30964548 ~ 30966942 (-)
G14620 NA non-coding downstream 106746 30038484 ~ 30038708 (-)
G14578 NA non-coding downstream 282891 29835317 ~ 29862563 (-)
G14567 NA non-coding downstream 372358 29768906 ~ 29773096 (-)
G14534 NA non-coding downstream 533980 29561798 ~ 29611474 (-)
G14541 NA non-coding downstream 545160 29593804 ~ 29600294 (-)
G14672 NA non-coding upstream 29017 30258418 ~ 30258877 (-)
G14694 NA non-coding upstream 194671 30424072 ~ 30424287 (-)
G14718 NA non-coding upstream 432418 30661819 ~ 30666449 (-)
G14720 NA non-coding upstream 442651 30672052 ~ 30672469 (-)
G14748 prdm1,LOC106941180,LOC103155240 non-coding upstream 536961 30766362 ~ 30767820 (-)
LOC111193878 NA other downstream 253149 29888799 ~ 29892305 (-)
dexi dexi,LOC107590611 other downstream 384202 29757687 ~ 29761252 (-)
emp2 emp2 other downstream 502151 29613486 ~ 29643303 (-)
carhsp1 carhsp1,LOC107733846,LOC107576530,LOC107738622,LOC107590589,LOC107690249 other downstream 1348996 28749534 ~ 28796458 (-)
fam214b fam214b,LOC102776582,LOC107684984,LOC107595918,LOC107672624 other downstream 3106708 27023495 ~ 27038746 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other upstream 31617 30261018 ~ 30268350 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other upstream 444659 30674060 ~ 30725921 (-)
LOC103045124 NA other upstream 660205 30889606 ~ 30892648 (-)
G14781 LOC107602351 other upstream 685509 30914910 ~ 30923249 (-)
trnap-agg_1 NA other upstream 694411 30923812 ~ 30924087 (-)

Expression


Co-expression Network