G14718


Basic Information

Item Value
gene id G14718
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 30661819 ~ 30666449 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU19736
tcttttttaataacacatttcaatattttaacagccatcttttttttctaacaagtaaaaatcatcaaaaaatctaaccaagaaaaaaagaaaagttttttttttttaacttcagtTTATTCCAAATAACCAAGGCTCTTCGCTACTCTCCTAATTCAAACGATGAAACTTCTGAACACAGTGAGAAGATATATTCAACGCATTGTTTCtcaaacaaattataaaaatagattGCATTTTCAAGTACATATTTACAGTATCAAACAGAGATCTGATGATATAATAAATGCACAGAGAGGATACAGTATCATTCACTAGGGGGAAGAGTAAACGGCCGTCAGACAGTGCAATACTGTTCCTGTATGtataagagagagtgtgtgtgtgtgtgtgtgtgtgtgagagagagagtctacagggtgtaaatgtaaatgtttgaaAAGCAAGAGGGAAATGTTCGTACTGTACTCACCATTTACCACATTCCAtcttttactgcagtaaaactAACAAAGACATCGATATGCAGAAACCGtcgcaaaataaataaataaattaataaataaataacacttcTTCCCATAGTTCATCATAAGTAACATAATCCTGATGCGAATCTGATTTGAACTCAACTGTTCACACAAGTTGCACTTTCAAAGCAAATGAAttgtagtattttttatttgaatcttattaaaaaaatgaaaaaaaaaaaaaatcaacatttcatCTACCTTTATGTGCTGCGACTTTAAATGACCTTTTAATCTGGTTCTGAATTCAGCTGTTACAACTGTTTACACGTTGCCATTTCAAgtacatttctatttatttgaatttcaaTTCAAATAATCCATTCATACACATATTTGCTGTTGCGCATTTGTAGTAGTCTCCTAAAGCGAATCAACTgcatacacattttagttttgaGATTTTTGAGGAGTTCACATTCCAAACTGGATCTAAATTCAGATCAGATGCTTATATATTGATACATGTTGtcatttcaaattaaattttGATCCAAAAACATCTGAATCTTAATTCTATTTGACTGTGCACACTTGATCACACGCGGTGGTTTTGAACTACCTGAAttcaaataaactaataaactcacacaattaCGTCCTACAAAGACACATTTTAGGTCTGGGATTTTTGAGACGTTCACATTTCAAACTGGATTTCAAACTGGATCTGAATTCAGATCAGCTGTTTATATGTTGGTACATGTTGccatttttaaagttaattctGATCTGAAAGCAAATTcaaataaaccatttattaacacATATATGAATCTGATCTGAATCTTCTATTCTTCTTCTATTTGACTGTGCACACTTGATCAcatgctgttttctttttaaactacATTTGAATCTGAATTCAAATAAACCAATGATACACATTTGCAGTGATGCATATTTTTGTAAGTATTTTTGATTCTTTAATTCAATCCAAACTATTCTCAAACACAATTAACTTATTTACCTAGACAGTGAATTAAGATGTTGTGAATTGACTGTTCACACTGTCAGGAAAGAATCAGCTGAtgcaaaactgtttttttttttcttatttttttcaatttctctTAAATACTCATTAAATTATGCGTAATCTGAATCTCAGAACACTTaaactcctcctcctcagccACCCTACTGTACACGGCGAAAAGTAACACTTCAAAAATTCAATAATACTAGAACATTCAGCACACCTCTTCCTGAAGAACAACTGTGGTGCAAAATACCAACATCAAGCCACGCTTTTGTCCGAATCTTCCGGGCAATACTTTCATATTCCATACGCTACAGTACATAATTCCGTCTGTAAGCAAGCGACTGACCACTCACAGACCACCCATACACACCTGCTGAAAgcgctgtaaaaaaatatatactccaCAGCCATCAAAAGTTACGATCCAATGGAACGGCAACGTATcaggatcattttttttttaaaatactgctCTATCGTCTTTTTCCTCACACTGCATCCATAGAACTGCTCACAGCCAGGTCCGTTCAAAAAGAGGGTCGGCAAGTGTCCGGAAAACGGAAGTAAATAGGCTGATAAATATGATACACGCTATTGAGAGAGCCTCAAACTTTACAGTGCAACAAGCATCTTCTGCAGTGAAGAcgcagcagtagtaatagtaataataaatataatactaataatataaatgaaacCTTCATTTCTGTCTGAAGTGAACATATTTAGGGTTCGTCTTTCAAAGCAGTGAaaagtgaagaagaagaagaaaaaaagaaagaaatagaaagagaataGTTTTCTGAAAAGTGAGTGAAAGTGACAATGATAATAAGACACAACTGAAGTACACAGGGACGCGGGTTTGGGGGTCGTAcgggtaataaataaaaagtctgCATTTACAGAGTCTTATTTCCTTTGATCTCTCAGATCAGTAGAAGTTCTTTTTGTTATTCCTGAAGGTTTCGATGTTCTCTCCTGCTTGTAAgagcagatttatttatttatcttcaaCTTGGCAACATGCTCCTCCTCAGTCCACTATAAAGGAAGTGTTGTGGGCAGTAGCTCGTACTGCTAATTGCTGAATTGCTAACTGCTAATTCACAAGCCTTTGTTATAGGACTGTTGGCATTTGGAGCGTCTGTCTTTTGGCTGTGTTCTAATCCACTAATCCACTGTGCCCAGGTCTGTGGAGGCATGAATGGAACCAGTGAACCATTATTTCCAGGAGTGGTTAAGCCCATGTTGTTGACACGGCCATTGAAGTTCAGGAAGTgtacaggtttaaaaaaaacagggccaaaaataaaattgtacatttttgaCACTGTTTTGGCTGAATTCGAGTCCATTATAgcttcaaagttcttgaaaaaaaaagtttcccagATCTAGGGAGGCATTCAGGACAGTGCTGTAGGGTAAATGGCCCAAAATGGTATGGATCACACCACTGGACCATAATTTCCATGAATCAGAAGGTAAGTGGATAGCatttacttcatatttcaaGAGCCACTTCCAAGAAATGGACCAAAACcattttttccaaaataaatcCATTCCTTCCCAAGACTAGCCCACAATGTTCAGACTTCTGAGACTGGTGGAACCATTGGAACTGTTGGAACATCCGTTAATGCCCAGGAAGTGTTCAggttaaaggaaaaataagTACTGCTAATTATTGGAGGGTCTTCTGGCTTTGTTCGAGTCCTTTACAGCTTTAAAGTTCTTGGCCCTGAAGACTAATCCACTGTGCCCATGTCTAAGGAGGATTCCAGGACAGTTCTGTAGGGTAAATGTTCTAAAACTGTATGGACTCAACCATTATTTCCAAGATTGGGAAGGTAGATGGACAATGTTTAAACCCAAGTTTTAGAAAATAGTCCAAGAAATGGACCAAAACCATCCATCCCTTCCACTGGAGTCTCTATGTTGTCCCAAGAGTATCTCACCTTGTTCAGACTGCTGGAACAATTGGATCTGTTGGAAGAACACTTGATGTTCAGGAAGCTTTCCGGTTTTGAGGGAAAACAGGGCTGAAATAGGAAAAACTTCTAGTTCCTAGCTGCTAATTCACAAGCTTTTGTTATGGGCTGTTGTCATTTGATcgtctttttgctgtttttgcgtCCATTACAGCTTTAAAGTGTTTCAAAATACTTGTATCCAGGTCCGATCAGGCATCCAGTACAGTGCAGTAGTAAAAAATGGCCCAAAACAGCACAAACTGAACCATGGAACCAGTATTTCCAAGAATGGGAGTCCAAGAAATGGACCAAAATCATTCCTTCCACAGGAGTGTCCACGACATCCAGTGAATAGCCCACATGGTTCAGACTGATGGTACTGTTGGAACGCCCCTTTAACATCAGGGAAACGTTCAGGTTTGAGGGAAAAAAGAGccgaaatacagaaaaaatgtgAACAGTGGTACTCTTAGTTGGTACTCATGGTCACATGATCCTCCACCCCTCGATCTTCCTACCGGTGGGCATCCTATACTGGGTCACTATGGGAACAGAGGTCCATTCGTCTCTCTCCCCGTCCTCGCTGAGAGCACTCCAGTTCgtttggagagtgtgtgtgctggtatgtgttggtgtgtgtgtgtgtgtgttagacctGCACTCCACGGCCGTGCATCTGGATGACTTGTGCTCTGAGAGTCTGAATGGCTGACAGCATCTGCTTCTGATGCTCCAGAGAAGTGATGCCTAGACTTAGAACGTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19736 True 4261 lncRNA 0.47 2 30661819 30666449

Neighbor

gene id symbol gene type direction distance location
tmc5 tmc5 coding downstream 701027 29942423 ~ 29960792 (-)
socs1 socs1 coding downstream 780905 29878041 ~ 29880914 (-)
grin2a grin2a,LOC107690256,LOC107685916,LOC107568390 coding downstream 1078557 29311410 ~ 29583262 (-)
usp7 usp7 coding downstream 1666714 28966485 ~ 28995105 (-)
ptx4 NA coding downstream 1718729 28934626 ~ 28943090 (-)
LOC103032739 NA coding upstream 215655 30882104 ~ 30884340 (-)
LOC103033392 NA coding upstream 270837 30937286 ~ 30945392 (-)
LOC111193890 NA coding upstream 280316 30946765 ~ 30954116 (-)
LOC103046043 NA coding upstream 289744 30956193 ~ 30962532 (-)
LOC111193897 LOC108413061 coding upstream 298099 30964548 ~ 30966942 (-)
G14694 NA non-coding downstream 237532 30424072 ~ 30424287 (-)
G14672 NA non-coding downstream 402942 30258418 ~ 30258877 (-)
G14660 NA non-coding downstream 432418 30145454 ~ 30229401 (-)
G14670 xylt1,LOC108439755,LOC107567884,LOC107733871,LOC107729195 non-coding downstream 440291 30217823 ~ 30221528 (-)
G14620 NA non-coding downstream 623111 30038484 ~ 30038708 (-)
G14720 NA non-coding upstream 5603 30672052 ~ 30672469 (-)
G14748 prdm1,LOC106941180,LOC103155240 non-coding upstream 99913 30766362 ~ 30767820 (-)
G14778 NA non-coding upstream 238035 30904484 ~ 30904698 (-)
G14807 rpl14,LOC107710319,LOC107688416,LOC107654689 non-coding upstream 258391 30924840 ~ 30928389 (-)
G14820 NA non-coding upstream 317091 30983540 ~ 30984031 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other downstream 393469 30261018 ~ 30268350 (-)
LOC111193878 NA other downstream 769514 29888799 ~ 29892305 (-)
dexi dexi,LOC107590611 other downstream 900567 29757687 ~ 29761252 (-)
emp2 emp2 other downstream 1018516 29613486 ~ 29643303 (-)
carhsp1 carhsp1,LOC107733846,LOC107576530,LOC107738622,LOC107590589,LOC107690249 other downstream 1865361 28749534 ~ 28796458 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other upstream 7611 30674060 ~ 30725921 (-)
LOC103045124 NA other upstream 223157 30889606 ~ 30892648 (-)
G14781 LOC107602351 other upstream 248461 30914910 ~ 30923249 (-)
trnap-agg_1 NA other upstream 257363 30923812 ~ 30924087 (-)
G14839 NA other upstream 387315 31053764 ~ 31055503 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G173155 NA non-coding CI01000036 null 515080 ~ 516137 (+)
grasscarp (Ctenopharyngodon idella) G394821 NA unknown CI01000223 null 141645 ~ 145413 (+)
tiger barb (Puntius tetrazona) G133190 LOC107654743,LOC107706254 non-coding NC_056717.1 CM032086.1 15190805 ~ 15277403 (-)