G14748 (prdm1,LOC106941180,LOC103155240)


Basic Information

Item Value
gene id G14748
gene name prdm1,LOC106941180,LOC103155240
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 30766362 ~ 30767820 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU19776
CTCATgaggtttctctccagtgtggaCAAGATGATGCTTCTGCAGGTGAGCAAGCTGAGTGAAGCTCTTTTTGCACAGCTGGCACTGGAAAGGCCTCTCTCCATTGTGTACCCTCAGGTGCACCTGCGAAGATACCTTCAGGTTGGAAAGCTGGCCGAAGGTTTTGAAGCAGACGTTGCACTCGTACTTGATCTTCCCGTTCTGTTTCTTCAACGGGTATGGGAGAGACTTGTACCCAGGTCCATGCCGtgaggaagatgatgatgacAATGACGATGATGACAATGACGATGATGACAATGGCGAGGAAGATGACTTGGGTGTGGAGGCCAGGCTGAGGTTGATGGCCTCTTCGCACATCGATTGGGGCGGCTGAAGAAGATGCAGTGGCTctggagaggaagaagaggagtgCTTGGACAGGGGAGAAAGTTCAGGAGTGGCTGGGGCTCCTTGGGGAGGGGAGGTGTTTGGAAGTCTCTCCTTTAAGCCACCGTGAGATGAGGGGTAGGGAAGGGAAACAGGCAGAAGATCTGGCTGGGTCATTGGTGGAAAGGACAAGTTGTCGTTGCCCATAAAACCATTGTATCTGACTGGTCCTCTGGGGGGCAGCATTGGAGGGAATGGAGGAGTGTATGGAGGCAAGAGCATGCGAGAGTAATGGGGGTTGTAGGGAGGTAAAAGCTGATAGGGGGGCTGCAGAGGTCTGGGAAAGGGCAGAGGAGGAGGGTAGGATGTGGGGTTGTCTTTGTAGCCGTAGAGGCCGTGAAGATGCAGTGGAAGATCTTGGTGCAGTCCTGGGAAGTTCTGAGGGCTCAGTTCAGCACGGGAAATGTTCTCCCGGGTGATCTCCGACTGGACTTTCTTACTAAAGTCCATGATGTGCTGGTCAGGTGTGTCTGGAGGAGTATCCCTCTCAATTGCCTCAACGTCAACCTTCTCTTCCGCCTCTTCCGCAACTTTTTCTTCCTTCTTGGCCTCGTCCTGGCTCTTGGGCAAGTGAGGGCTTGGTCCTCGTTTTGGGCAGCAGGTCCACTGAGGTAGGTAGTGCTTCTGGAGGTCAGCTTCCATCACGTTGCCGC

Function

symbol description
prdm1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in cytoplasm and nucleus.

NR:

description
PREDICTED: PR domain zinc finger protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19776 True 1082 lncRNA 0.47 2 30766362 30767820

Neighbor

gene id symbol gene type direction distance location
tmc5 tmc5 coding downstream 805570 29942423 ~ 29960792 (-)
socs1 socs1 coding downstream 885448 29878041 ~ 29880914 (-)
grin2a grin2a,LOC107690256,LOC107685916,LOC107568390 coding downstream 1183100 29311410 ~ 29583262 (-)
usp7 usp7 coding downstream 1771257 28966485 ~ 28995105 (-)
ptx4 NA coding downstream 1823272 28934626 ~ 28943090 (-)
LOC103032739 NA coding upstream 114284 30882104 ~ 30884340 (-)
LOC103033392 NA coding upstream 169466 30937286 ~ 30945392 (-)
LOC111193890 NA coding upstream 178945 30946765 ~ 30954116 (-)
LOC103046043 NA coding upstream 188373 30956193 ~ 30962532 (-)
LOC111193897 LOC108413061 coding upstream 196728 30964548 ~ 30966942 (-)
G14720 NA non-coding downstream 93893 30672052 ~ 30672469 (-)
G14718 NA non-coding downstream 99913 30661819 ~ 30666449 (-)
G14694 NA non-coding downstream 342075 30424072 ~ 30424287 (-)
G14672 NA non-coding downstream 507485 30258418 ~ 30258877 (-)
G14660 NA non-coding downstream 536961 30145454 ~ 30229401 (-)
G14778 NA non-coding upstream 136664 30904484 ~ 30904698 (-)
G14807 rpl14,LOC107710319,LOC107688416,LOC107654689 non-coding upstream 157020 30924840 ~ 30928389 (-)
G14820 NA non-coding upstream 215720 30983540 ~ 30984031 (-)
G14834 NA non-coding upstream 280536 31048356 ~ 31048607 (-)
G14876 ddx41,LOC107749764,LOC107750345 non-coding upstream 413166 31180986 ~ 31193793 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other downstream 40441 30674060 ~ 30725921 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other downstream 498012 30261018 ~ 30268350 (-)
LOC111193878 NA other downstream 874057 29888799 ~ 29892305 (-)
dexi dexi,LOC107590611 other downstream 1005110 29757687 ~ 29761252 (-)
emp2 emp2 other downstream 1123059 29613486 ~ 29643303 (-)
LOC103045124 NA other upstream 121786 30889606 ~ 30892648 (-)
G14781 LOC107602351 other upstream 147090 30914910 ~ 30923249 (-)
trnap-agg_1 NA other upstream 155992 30923812 ~ 30924087 (-)
G14839 NA other upstream 285944 31053764 ~ 31055503 (-)
nfkb1 nfkb1,LOC106536450 other upstream 1354402 32122222 ~ 32159963 (-)

Expression


Co-expression Network