LOC103045124


Basic Information

Item Value
gene id LOC103045124
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 30889606 ~ 30892648 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU19826
cgtccagctctctctctctctctctcttacacacacacactcacacagatccAGGTATAGAGAGTGATCTCTGACAGGCAGCAGGCGACACCTCTCCACCTGTCACCAGCATGAAGCTCCTGatggctctgctgctgctctacGCCACGGCTCTGCTGACACTGACACCTGCACAGgCCGATTCGAGCACAACGGTTTCTCCCAACAGCACAGCAACATCATCTGGCTCATCTTCATCCACCTCCTCAAGCTCCACCTCCTCAAGCTCCACCTCCTCAAGCTCCACCTCCACAAGCTCCACCTCCTCAAGCTCCCCCTCCTCAGGCACCACCACCACAAACTCCACGACCACCAACTCCACCAGCGTCACTGCCAGCCTGAGCACCACCCCGAAAGGAGGAAGCTGGAGGATTAGCGCATCGGGCACCACGTTCATCCTGACTCAGCTGTTCCTCGCTCTAAAAATGACttattaacatattaaacaaacaaatatatatatatatatatatattactctaGAAGCAATACTCTCGCTTTTACCCTCTTACTTCACTGCTTCTGTATGATTCTCAACCTtgtatctccaaaatgactacatttttcagaagaagaaaaaaattcttaacttttattggAAGTCaatgaaacatgttttattcCAGACCAGGTCATTGTGAAGCATCTCTGTTGGTccatgaaattaataaaaaaaacaactgccagattaaAGTTATGTCAAAAAGTTATATCTTCATTTTTTGTTCTATATAACAATAATGATACCTACAATGTCATATAAGCCATTGCCTTAAAATGAATGTGCAGTTTAGACACTGCTATATGATGAAGGCACACcagaattatattttacatagatttttttctatgtaaatgcacttttctttaaCATGTTTCTTTATGTACATTTTGATTACATTCATTACAATCatttcaaataattaaatataataatgtaaagtgtaaatttatagaattaaagtttttgttCACTTCCT
>TU19827
cgtccagctctctctctctctctctcttacacacacacactcacacagatccAGGTATAGAGAGTGATCTCTGACAGGCAGCAGGCGACACCTCTCCACCTGTCACCAGCATGAAGCTCCTGatggctctgctgctgctctacGCCACGGCTCTGCTGACACTGACACCTGCACAGgCCGATTCGAGCACAACGGTTTCTCCCAACAGCACAGCAACATCATCTGGCTCATCTTCATCCACCTCCTCAAGCTCCACCTCCTCAAGCTCCACCTCCTCAAGCTCCACCTCCACAAGCTCCACCTCCTCAAGCTCCCCCTCCTCAGGCACCACCACCACAAACTCCACGACCACCAACTCCACCAGCGTCACTGCCAGCCTGAGCACCACCCCGAAAGGAGGAAGCTGGAGGATTAGCGCATCGGGCACCACGTTCATCCTGACTCAGCTGTTCCTCGCTCTAAAAATGACttattaacatattaaacaaacaaatatatatatatatatatatattactctaGAAGCAATACTCTCGCTTTTACCCTCTTACTTCACTGCTTCTGTATGATTCTCAACCTACACCATGTTTAAAAgtccttgtatctccaaaatgactacatttttcagaagaagaaaaaaattcttaacttttattggAAGTCaatgaaacatgttttattcCAGACCAGGTCATTGTGAAGCATCTCTGTTGGTccatgaaattaataaaaaaaacaactgccagattaaAGTTATGTCAAAAAGTTATATCTTCATTTTTTGTTCTATATAACAATAATGATACCTACAATGTCATATAAGCCATTGCCTTAAAATGAATGTGCAGTTTAGACACTGCTATATGATGAAGGCACACcagaattatattttacatagatttttttctatgtaaatgcacttttctttaaCATGTTTCTTTATGTACATTTTGATTACATTCATTACAATCatttcaaataattaaatataataatgtaaagtgtaaatttatagaattaaagtttttgttCACTTCCT
>TU19828
cgtccagctctctctctctctctctcttacacacacacactcacacagatccAGGTATAGAGAGTGATCTCTGACAGGCAGCAGGCGACACCTCTCCACCTGTCACCAGCATGAAGCTCCTGatggctctgctgctgctctacGCCACGGCTCTGCTGACACTGACACCTGCACAGgCCGATTCGAGCACAACGGTTTCTCCCAACAGCACAGCAACATCATCTGGCTCATCTTCATCCACCTCCTCAAGCTCCACCTCCTCAAGCTCCACCTCCTCAAGCTCCCCCTCCTCAGGCACCACCACCACAAACTCCACGACCACCAACTCCACCAGCGTCACTGCCAGCCTGAGCACCACCCCGAAAGGAGGAAGCTGGAGGATTAGCGCATCGGGCACCACGTTCATCCTGACTCAGCTGTTCCTCGCTCTAAAAATGACttattaacatattaaacaaacaaatatatatatatatatatatattactctaGAAGCAATACTCTCGCTTTTACCCTCTTACTTCACTGCTTCTGTATGATTCTCAACCTACACCATGTTTAAAAgtccttgtatctccaaaatgactacatttttcagaagaagaaaaaaattcttaacttttattggAAGTCaatgaaacatgttttattcCAGACCAGGTCATTGTGAAGCATCTCTGTTGGTccatgaaattaataaaaaaaacaactgccagattaaAGTTATGTCAAAAAGTTATATCTTCATTTTTTGTTCTATATAACAATAATGATACCTACAATGTCATATAAGCCATTGCCTTAAAATGAATGTGCAGTTTAGACACTGCTATATGATGAAGGCACACcagaattatattttacatagatttttttctatgtaaatgcacttttctttaaCATGTTTCTTTATGTACATTTTGATTACATTCATTACAATCatttcaaataattaaatataataatgtaaagtgtaaatttatagaattaaagtttttgttCACTTCCT
>XM_007245623.3
ctctctctctcttacacacacacactcacacagatccAGGTATAGAGAGTGATCTCTGACAGGCAGCAGGCGACACCTCTCCACCTGTCACCAGCATGAAGCTCCTGatggctctgctgctgctctacGCCACGGCTCTGCTGACACTGACACCTGCACAGgCCGATTCGAGCACAACGGTTTCTCCCAACAGCACAGCAACATCATCTGGCTCATCTTCATCCACCTCCTCAAGCTCCACCTCCTCAAGCTCCACCTCCTCAAGCTCCACCTCCACAAGCTCCACCTCCTCAAGCTCCCCCTCCTCAGGCACCACCACCACAAACTCCACGACCACCAACTCCACCAGCGTCACTGCCAGCCTGAGCACCACCCCGAAAGGAGGAAGCTGGAGGATTAGCGCATCGGGCACCACGTTCATCCTGACTCAGCTGTTCCTCGCTCTAAAAATGACttattaacatattaaacaaacaaatatatatatatatatatatattactctaGAAGCAATACTCTCGCTTTTACCCTCTTACTTCACTGCTTCTGTATGATTCTCAACCTACACCATGTTTAAAAgtccttgtatctccaaaatgactacatttttcagaagaagaaaaaaattcttaacttttattggAAGTCaatgaaacatgttttattcCAGACCAGGTCATTGTGAAGCATCTCTGTTGGTccatgaaattaataaaaaaaacaactgccagattaaAGTTATGTCAAAAAGTTATATCTTCATTTTTTGTTCTATATAACAATAATGATACCTACAATGTCATATAAGCCATTGCCTTAAAATGAATGTGCAGTTTAGACACTGCTATATGATGAAGGCACACcagaattatattttacatagatttttttctatgtaaatgcacttttctttaaCATGTTTCTTTATGTACATTTTGATTACATTCATTACAATCatttcaaataattaaatataataatgtaaagtgtaaatttatagaattaaagtttttgttCACTTCCT

Function

GO:

id name namespace
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU19826 False 1019 TUCP 0.40 3 30889606 30892648
TU19827 True 1039 TUCP 0.40 2 30889606 30892648
TU19828 False 1009 TUCP 0.40 3 30889606 30892648
XM_007245623.3 False 1024 mRNA 0.40 2 30889606 30892633

Neighbor

gene id symbol gene type direction distance location
LOC103032739 NA coding downstream 5266 30882104 ~ 30884340 (-)
tmc5 tmc5 coding downstream 928814 29942423 ~ 29960792 (-)
socs1 socs1 coding downstream 1008692 29878041 ~ 29880914 (-)
grin2a grin2a,LOC107690256,LOC107685916,LOC107568390 coding downstream 1306344 29311410 ~ 29583262 (-)
usp7 usp7 coding downstream 1894501 28966485 ~ 28995105 (-)
LOC103033392 NA coding upstream 44638 30937286 ~ 30945392 (-)
LOC111193890 NA coding upstream 54117 30946765 ~ 30954116 (-)
LOC103046043 NA coding upstream 63545 30956193 ~ 30962532 (-)
LOC111193897 LOC108413061 coding upstream 71900 30964548 ~ 30966942 (-)
LOC103046348 NA coding upstream 74621 30967269 ~ 30970158 (-)
G14748 prdm1,LOC106941180,LOC103155240 non-coding downstream 121786 30766362 ~ 30767820 (-)
G14720 NA non-coding downstream 217137 30672052 ~ 30672469 (-)
G14718 NA non-coding downstream 223157 30661819 ~ 30666449 (-)
G14694 NA non-coding downstream 465319 30424072 ~ 30424287 (-)
G14672 NA non-coding downstream 630729 30258418 ~ 30258877 (-)
G14778 NA non-coding upstream 11836 30904484 ~ 30904698 (-)
G14807 rpl14,LOC107710319,LOC107688416,LOC107654689 non-coding upstream 32192 30924840 ~ 30928389 (-)
G14820 NA non-coding upstream 90892 30983540 ~ 30984031 (-)
G14834 NA non-coding upstream 155708 31048356 ~ 31048607 (-)
G14876 ddx41,LOC107749764,LOC107750345 non-coding upstream 288338 31180986 ~ 31193793 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other downstream 163685 30674060 ~ 30725921 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other downstream 621256 30261018 ~ 30268350 (-)
LOC111193878 NA other downstream 997301 29888799 ~ 29892305 (-)
dexi dexi,LOC107590611 other downstream 1128354 29757687 ~ 29761252 (-)
emp2 emp2 other downstream 1246303 29613486 ~ 29643303 (-)
G14781 LOC107602351 other upstream 22262 30914910 ~ 30923249 (-)
trnap-agg_1 NA other upstream 31164 30923812 ~ 30924087 (-)
G14839 NA other upstream 161116 31053764 ~ 31055503 (-)
nfkb1 nfkb1,LOC106536450 other upstream 1229574 32122222 ~ 32159963 (-)
hopx hopx,LOC107552340 other upstream 1921400 32814048 ~ 32820804 (-)

Expression


Co-expression Network