trnap-agg_1


Basic Information

Item Value
gene id trnap-agg_1
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 30923812 ~ 30924087 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU19839
AAATCAGCTGCAGCCACGCTGTAGTTCCACAAAGCAGCCAAAGGATGGCGCCAAAATAACAGGTACAGTTACAGTAGTACATAAAAACAGCGCACGTAGCGACCTGTGGAGACTGAAGTTGGGCTTAACGGTGGTCACGcggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggacgagcccacGTTTTCTAACCAATCAATAGATCTGATTGATTCAAATCAAAATGTACATGATTATATGCAGA
>trnap-agg_1
ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19839 True 276 lncRNA 0.48 1 30923812 30924087
trnap-agg_1 False 72 tRNA 0.60 1 30923876 30923947

Neighbor

gene id symbol gene type direction distance location
LOC103032739 NA coding downstream 39472 30882104 ~ 30884340 (-)
tmc5 tmc5 coding downstream 963020 29942423 ~ 29960792 (-)
socs1 socs1 coding downstream 1042898 29878041 ~ 29880914 (-)
grin2a grin2a,LOC107690256,LOC107685916,LOC107568390 coding downstream 1340550 29311410 ~ 29583262 (-)
usp7 usp7 coding downstream 1928707 28966485 ~ 28995105 (-)
LOC103033392 NA coding upstream 13199 30937286 ~ 30945392 (-)
LOC111193890 NA coding upstream 22678 30946765 ~ 30954116 (-)
LOC103046043 NA coding upstream 32106 30956193 ~ 30962532 (-)
LOC111193897 LOC108413061 coding upstream 40461 30964548 ~ 30966942 (-)
LOC103046348 NA coding upstream 43182 30967269 ~ 30970158 (-)
G14778 NA non-coding downstream 19114 30904484 ~ 30904698 (-)
G14748 prdm1,LOC106941180,LOC103155240 non-coding downstream 155992 30766362 ~ 30767820 (-)
G14720 NA non-coding downstream 251343 30672052 ~ 30672469 (-)
G14718 NA non-coding downstream 257363 30661819 ~ 30666449 (-)
G14694 NA non-coding downstream 499525 30424072 ~ 30424287 (-)
G14807 rpl14,LOC107710319,LOC107688416,LOC107654689 non-coding upstream 753 30924840 ~ 30928389 (-)
G14820 NA non-coding upstream 59453 30983540 ~ 30984031 (-)
G14834 NA non-coding upstream 124269 31048356 ~ 31048607 (-)
G14876 ddx41,LOC107749764,LOC107750345 non-coding upstream 256899 31180986 ~ 31193793 (-)
G14877 NA non-coding upstream 257739 31181826 ~ 31229953 (-)
G14781 LOC107602351 other downstream 563 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 31164 30889606 ~ 30892648 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other downstream 197891 30674060 ~ 30725921 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other downstream 655462 30261018 ~ 30268350 (-)
LOC111193878 NA other downstream 1031507 29888799 ~ 29892305 (-)
G14839 NA other upstream 129677 31053764 ~ 31055503 (-)
nfkb1 nfkb1,LOC106536450 other upstream 1198135 32122222 ~ 32159963 (-)
hopx hopx,LOC107552340 other upstream 1889961 32814048 ~ 32820804 (-)
G15497 NA other upstream 3210505 34134592 ~ 34136732 (-)
evc2 NA other upstream 3227736 34151823 ~ 34172017 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) trnap-cgg_3 NA misc NC_047606.1 CM018552.1 4911734 ~ 4918977 (-)
bowfin (Amia calva) AMCG00009216 NA coding CM030126.1 CM030126.1 29163273 ~ 29171791 (-)