G14807 (rpl14,LOC107710319,LOC107688416,LOC107654689)


Basic Information

Item Value
gene id G14807
gene name rpl14,LOC107710319,LOC107688416,LOC107654689
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 30924840 ~ 30928389 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU19866
GTGAACAAGTCAAACAGATTTATTAAAGAGCATTCAGGCCTTTTTTGCAGCAGCTGCTGAAGCAGCTTTCTGGAGCTTCTTAACCTCCTGCTTGATGATCTTGTTCCTCATTTTCTTGGCCTTCATGACCTTGAAGCGGTCAAAGTCGGTCATCTTGGCTCtCCTTTGTCTGGCTTCGATCTTCTTGGCCCAGCTGCTCTCGGACCATTTCTTGTTGACCTCAGCCTTCTCCCAGGCACGCCTCACAAACTTCTGGCGAGCACTGTGTGGGATTTTGATGACGTAGTCGGTGAGCTGCATGCACTTGAATGGCATTGACTGCCTCTTCACACCAGTGCAGGGACCATCCACCAGTGcCCTATTTTGGTCGATGACATCTACGATCGCCACCAACTTTCCCTCGTGAGGTCCGAAGCCAACGTAGGCGACGCGGCCAATTTCTACGAAGCGCTTGAACACCATGATGGCAGATCGGGGT
>TU19871
GTGAACAAGTCAAACAGATTTATTAAAGAGCATTCAGGCCTTTTTTGCAGCAGCTGCTGAAGCAGCTTTCTGGAGCTTCTTAACCTCCTGCTTGATGATCTTGTTCCTCATTTTCTTGGCCTTCATGACCTTGAAGCGGTCAAAGTCGGTCATCTTGGCTCtCCTTTGTCTGGCTTCGATCTTCTTGGCCCAGCTGCTCTCGGACCATTTCTTGTTGACCTCAGCCTTCTCCCAGGCACGCCTCACAAACTTCTGGCGAGCACTGTGTGGGATTTTGATGACGTAGTCGGTGAGCTGCATGCACTTGAATGGCATTGACTGCCTCTTCACACCAGTGCAGGGACCATCCACCAGTGcctacacacaccaaaacaagcAATTTATTACATAATGAacctgacttccattgaaagtt

Function

symbol description
rpl14 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal large subunit biogenesis. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human RPL14 (ribosomal protein L14).

NR:

description
PREDICTED: 60S ribosomal protein L14

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19866 True 478 lncRNA 0.52 6 30924840 30928389
TU19871 False 415 lncRNA 0.48 4 30926835 30928389

Neighbor

gene id symbol gene type direction distance location
LOC103032739 NA coding downstream 40500 30882104 ~ 30884340 (-)
tmc5 tmc5 coding downstream 964048 29942423 ~ 29960792 (-)
socs1 socs1 coding downstream 1043926 29878041 ~ 29880914 (-)
grin2a grin2a,LOC107690256,LOC107685916,LOC107568390 coding downstream 1341578 29311410 ~ 29583262 (-)
usp7 usp7 coding downstream 1929735 28966485 ~ 28995105 (-)
LOC103033392 NA coding upstream 8897 30937286 ~ 30945392 (-)
LOC111193890 NA coding upstream 18376 30946765 ~ 30954116 (-)
LOC103046043 NA coding upstream 27804 30956193 ~ 30962532 (-)
LOC111193897 LOC108413061 coding upstream 36159 30964548 ~ 30966942 (-)
LOC103046348 NA coding upstream 38880 30967269 ~ 30970158 (-)
G14778 NA non-coding downstream 20142 30904484 ~ 30904698 (-)
G14748 prdm1,LOC106941180,LOC103155240 non-coding downstream 157020 30766362 ~ 30767820 (-)
G14720 NA non-coding downstream 252371 30672052 ~ 30672469 (-)
G14718 NA non-coding downstream 258391 30661819 ~ 30666449 (-)
G14694 NA non-coding downstream 500553 30424072 ~ 30424287 (-)
G14820 NA non-coding upstream 55151 30983540 ~ 30984031 (-)
G14834 NA non-coding upstream 119967 31048356 ~ 31048607 (-)
G14876 ddx41,LOC107749764,LOC107750345 non-coding upstream 252597 31180986 ~ 31193793 (-)
G14877 NA non-coding upstream 253437 31181826 ~ 31229953 (-)
G14879 NA non-coding upstream 284180 31212569 ~ 31214056 (-)
trnap-agg_1 NA other downstream 753 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 1591 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 32192 30889606 ~ 30892648 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other downstream 198919 30674060 ~ 30725921 (-)
rps15a RPS15A,rps15a,MGC114789,LOC107686992 other downstream 656490 30261018 ~ 30268350 (-)
G14839 NA other upstream 125375 31053764 ~ 31055503 (-)
nfkb1 nfkb1,LOC106536450 other upstream 1193833 32122222 ~ 32159963 (-)
hopx hopx,LOC107552340 other upstream 1885659 32814048 ~ 32820804 (-)
G15497 NA other upstream 3206203 34134592 ~ 34136732 (-)
evc2 NA other upstream 3223434 34151823 ~ 34172017 (-)

Expression


Co-expression Network