G14876 (ddx41,LOC107749764,LOC107750345)


Basic Information

Item Value
gene id G14876
gene name ddx41,LOC107749764,LOC107750345
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 31180986 ~ 31193793 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU19979
CCACATCCTTTATTGATGAAAGTTGTGGCGACTCCAGTCTTGCCTGATCGACCCGTCCTACCGATTCTGTGGACGTAGTTCTCGATTTCCTCAGGCATGTCGTAGTTAATCACGTGCTGGATGGCCGGGAAATCCAGACCCTTGGACGCCACGTCCGTGGCCACCAGAAcgtccttcttcccctccttaaACGCCTCGATGGCTTTCGTTCTCTCCTCCTGATCTTTTCCTCCGTGGATAGCCACTGCCTCCACACCTTTCAGCAGCAGGTACTCGTGTATGGCATCCACGTCTGCTTTCTTCTCAGCAAATATTAACACTGGTGGTGGTGTTTTCTGCAAGCACTCCAGTAGATATACCATTTTGGCTTCCTCTTTAACATACTCCACTTCCTGAATGACGTCCAAGCTCGCAGCTCCAGCTCGGCCCACGTTGATGGTGATGGGTTTAACCAGCGCACTTTTAGCAAAGTTCTGAATCTTTTTGGGCATGGTGGCACTGAAGAGCAGCGTCTGCCTTTGACCCTTAAAGTAAGAGAAGATGGTCCTAATGTCCTCCTCGAAGCCCATGTCAATCATCCTGTCCGCCTCATCCAGAGCCAGGTAACGGCAGATGTCCAAACTCACCATCTTCTTATTCAGCAGGTCCATCAGCCTGCCTGGGGTGGCCACCATCATGTGCACCCCATGCTTAACCACTTCCATCTGCTCTTTGACCGACATGCCTCCGATACACAGAGCCGAGCGCATCTGCGGCGCACCTTCATCCTCCAGCAGCTTGCAGTAATACTCTATGATGCTGTGGGTCTGCCTCGCCAGCTCCCTAGAAGGACAGATGATGAGTCCATAAGGCCCCTCCCTCTTGCAGAAGGGCAGCCGCTTCTCCTGCTCCAGACAGAACATGATGATGGGCAGAGTGAACACCAGAGTTTTTCCCGAGCCCGTGAACGCAATGCCAATCATATCTCTGCCTGACAGGATGGTTGGGATTCCTTGGATCTGGATGGGAGTTGGATGGACAATTCCTTTCTTCTTCAGGCCTTTCAGAATCgCTTGAGGGAACTTCATTTCTCTGAAGCTCTTTATAGGGGCAGGAATGCCGTCTCCCTCCACCAGGATGTGGTACTTCTTCCGCACTCGCTCATGCCTCGCTTTCGGCATGCTTAATATGTAGCGAGGAGCTTTCCAGCTTGTTTTAATTGGGTCTTCATATGTGATACCTTTGGCCATTTCCTTTACAGACATTAAAGctctgccTTCAGCCACGCTCTCCAAaatcttctcctcctccttcagctGTTTCTCCTTCGCCGACTCCTTACGagCTTCTGCTTTCTCCTTAAGGTGCTGGTGCTGATCCAGCAGGCTGACGTTGGATCGCGGCCCGAGACCCTCGTCCTCATCTTTCTGTTCTCCTCCGCTGTCCTTCTGTTCCTCCTCAGTCAATCCCTTCCCTCGCAGACGCATCATCTTCTGCATCATCTGCTGTTTTCTGATCTTAACAGGAACATATGGAACATAATCGTCGTCTTCTGAAGGCTCGGATCCGGACCTCTCTCCGGAGTAACTCCGCTTCCCCGGCCGGCTCTCCGCCTCCATGCTGCGGGCGGATGGTGGCTGTAGTGCGGGGCAACACACTACGCATGCGCTACGGCGCGCGACACGAGCCAAACCGCGAGACGAGAACGAACAACACGTGATCAAAAATCTAGCTTTTAACAGTCAggccagcagggggcgctgCCGAGAGAGAGGCTGAAATTAGGCAAAATCAAGCAAAAtcatataaataatgtatataaatgtttaataattttatacaaTCCGTGTGTCATGCATT

Function

symbol description
ddx41 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and carbohydrate binding activity. Acts upstream of or within NIK/NF-kappaB signaling; innate immune response; and response to virus. Located in cytoplasm and nucleus. Is expressed in brain; digestive system; gill; heart; and immune system. Orthologous to human DDX41 (DEAD-box helicase 41).

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DDX41

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19979 True 1839 lncRNA 0.45 16 31180986 31193793

Neighbor

gene id symbol gene type direction distance location
LOC103034575 LOC103034575,LOC108414240,LOC108256545,LOC107706261,LOC107710337,LOC107654753,LOC107688361,LOC107592060 coding downstream 55840 31106308 ~ 31125146 (-)
LOC103047264 LOC108275079,LOC107710336,LOC107688362,LOC107706145,LOC107591988,LOC107654751 coding downstream 97694 31058768 ~ 31083292 (-)
LOC103046348 NA coding downstream 210828 30967269 ~ 30970158 (-)
LOC111193897 LOC108413061 coding downstream 214044 30964548 ~ 30966942 (-)
LOC103046043 NA coding downstream 218454 30956193 ~ 30962532 (-)
LOC107197536 LOC107086207 coding upstream 22439 31216232 ~ 31222423 (-)
pdlim7 pdlim7 coding upstream 687001 31880794 ~ 31943297 (-)
higd2a higd2a coding upstream 761813 31955606 ~ 31958456 (-)
rnf44 rnf44,LOC107749756,LOC107677379 coding upstream 779799 31973592 ~ 31995512 (-)
abhd18 abhd18,LOC107595739,LOC107653339,LOC107677374,LOC107750342,LOC107587096 coding upstream 852316 32046109 ~ 32055172 (-)
G14834 NA non-coding downstream 132379 31048356 ~ 31048607 (-)
G14820 NA non-coding downstream 196955 30983540 ~ 30984031 (-)
G14807 rpl14,LOC107710319,LOC107688416,LOC107654689 non-coding downstream 252597 30924840 ~ 30928389 (-)
G14778 NA non-coding downstream 276288 30904484 ~ 30904698 (-)
G14748 prdm1,LOC106941180,LOC103155240 non-coding downstream 413166 30766362 ~ 30767820 (-)
G14879 NA non-coding upstream 18776 31212569 ~ 31214056 (-)
G14882 NA non-coding upstream 62192 31255985 ~ 31256204 (-)
G14883 NA non-coding upstream 66975 31260768 ~ 31260986 (-)
G14885 NA non-coding upstream 73867 31267660 ~ 31268093 (-)
G15023 NA non-coding upstream 335544 31529337 ~ 31621297 (-)
G14839 NA other downstream 125483 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 256899 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 257737 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 288338 30889606 ~ 30892648 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other downstream 455065 30674060 ~ 30725921 (-)
nfkb1 nfkb1,LOC106536450 other upstream 928429 32122222 ~ 32159963 (-)
hopx hopx,LOC107552340 other upstream 1620255 32814048 ~ 32820804 (-)
G15497 NA other upstream 2940799 34134592 ~ 34136732 (-)
evc2 NA other upstream 2958030 34151823 ~ 34172017 (-)
G15498 NA other upstream 3047533 34241326 ~ 34242318 (-)

Expression


Co-expression Network