G15022


Basic Information

Item Value
gene id G15022
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 31877805 ~ 31879843 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU20185
ttttttgatgcttcagtgagaatctacaatataatgtaaatagtcatgaaaaaataaaggaaacgcACTGAAtaagactgtatataaagtaaaaacgGCCGCAGGACCGTGATTTACTCGCTTGCTACCTTTAGCTTTGCCCTCCAACCCCCCAGATGGAGCCCAGACCCAGTTTCCCCACCGCCTGATTCGCTGTGGCGGGGTACTTAAGGTAATGGCGAACCACTGAGGAAGAAAAAAGAGCCGCTggcagcagaacagcagtgcaTTAGCGCTGATTGCGACCATTTCATATTGACCCGACCAATGATCTTTACGTGCCTCCAATACTGAGCGCCCCACATCTATCTGCTCTAATCCGACAGGTAGCTCTAATTAAGAAAAGGCTTAAGGCCTGCGTGCGCTGAGCTGAACCGGCGCCAACACGCCGCTGCCTCGTACCTCTAATAAGACATGCAAAGAAAAGAACGAAAGAATATACGAATAAACGATGGAAGAAGAACCGGCTTTAAGAAAACCAAAGAGCACCAAAAAAAGGCTTTGCCTTTGTAGCTAACTCTCTTTAAAAGGTGTGACCTTactacaaacaaaaactaataaaaaattagaaaagaaaTTAATCAGATATATTAAAGAAtcttatatcaatatttttagaaACCACTCGAAGTGCAGGTTCTGAATCTTCTGAATTTTTTCCCCATTGGTTTCTACACAGGAAGGACAGTCACAATGATAATTATAGATTTAtcatattcaaaataaaatggACATgtcctcaataatatttgatctTGATAATGCAGATCTCctctattgtgttttatttgaacACTATTGTAGCCAATGTTTCGATAAATTCGAGTCCATACACACAGTATGaactgcagtaggtgaagacATGGGAGGTGTATctactagtgcatcccaaaaaatagagaatatcattgaaaagtaacatttttatttcagtaatttagttaaaaatgtgaaactcgtatataatataacaacagCTAAACCTGTTGTTTCCACCCTCCAGCCTGCACTCCACCTGCTGTAATAGAAACTGCTGGTTTTTAGCATGCTGTTAGCATGTAGCACCACAGTGTTCTGTTCTGAATATTAATCAGAAAATCCCTTATCAGACGCCTTTTGGTTTTACCAGACCTGTACACTCCGTAACACCAGACCTGTACACTCCGTAACTCCAGACCTGTACACTCCGTAACTCCAGACCTGTACACTCCGTAACTCCAGACCTGTACACTCCGTAACTCCAGTTCTGTTCATTCCGTAACTCAAGACCTGTACACTCCATAACACCAGACTTGTACACTCCGTAACACCGTCGGCAGTGAGCTTTAGCGAAACGGTGTtgactgtgtgtttttgtattaaaGATTTGTCTTATATTAAAGTGCCTTTTTTTTCAACAGCTTTTCAGCTCCAGACTTTATCATGATGCGTTTAAAGGAAAAACTGCTGTATTCTCTTTCACACTAGAAATGTTCTTATGCAAATTGACG
>TU20186
gaacacatgtggagttttatgtacttaacaaaaaagaaaaggtgaaataactaaaaataaaaacatgttttatattctagtttcttcaaaataaaagcccccctttgctctgattactgctttgcacactcttggcatcattctctcaatgagcttcttcaagaggtggccacctgaaataaacagtgttccaaaagtcttgaagaaagaaaggaaggagttcccagaggtgtttattagcacttgttggctccttgccttcttcactctgtgctccagctcaccccaaacccaaagctcatctggattgggttcaggtccggtgactgtggaggacggctcatttttttttttttaagttaagtacataaaactccacatgtgttcattcatagttttttgatgcttcagtgagaatctacaatataatgtaaatagtcatgaaaaaataaaggaaacgcACTGAAtaagactgtatataaagtaaaaacgGCCGCAGGACCGTGATTTACTCGCTTGCTACCTTTAGCTTTGCCCTCCAACCCCCCAGATGGAGCCCAGACCCAGTTTCCCCACCGCCTGATTCGCTGTGGCGGGGTACTTAAGGTAATGGCGAACCACTGAGGAAGAAAAAAGAGCCGCTggcagcagaacagcagtgcaTTAGCGCTGATTGCGACCATTTCATATTGACCCGACCAATGATCTTTACGTGCCTCCAATACTGAGCGCCCCACATCTATCTGCTCTAATCCGACAGGTAGCTCTAATTAAGAAAAGGCTTAAGGCCTGCGTGCGCTGAGCTGAACCGGCGCCAACACGCCGCTGCCTCGTACCTCTAATAAGACATGCAAAGAAAAGAACGAAAGAATATACGAATAAACGATGGAAGAAGAACCGGCTTTAAGAAAACCAAAGAGCACCAAAAAAAGGCTTTGCCTTTGTAGCTAACTCTCTTTAAAAGGTGTGACCTTactacaaacaaaaactaataaaaaattagaaaagaaaTTAATCAGATATATTAAAGAAtcttatatcaatatttttagaaACCACTCGAAGTGCAGGTTCTGAATCTTCTGAATTTTTTCCCCATTGGTTTCTACACAGGAAGGACAGTCACAATGATAATTATAGATTTAtcatattcaaaataaaatggACATgtcctcaataatatttgatctTGATAATGCAGATCTCctctattgtgttttatttgaacACTATTGTAGCCAATGTTTCGATAAATTCGAGTCCATACACACAGTATGaactgcagtaggtgaagacATGGGAGGTGTATctactagtgcatcccaaaaaatagagaatatcattgaaaagtaacatttttatttcagtaatttagttaaaaatgtgaaactcgtatataatataacaacagCTAAACCTGTTGTTTCCACCCTCCAGCCTGCACTCCACCTGCTGTAATAGAAACTGCTGGTTTTTAGCATGCTGTTAGCATGTAGCACCACAGTGTTCTGTTCTGAATATTAATCAGAAAATCCCTTATCAGACGCCTTTTGGTTTTACCAGACCTGTACACTCCGTAACACCAGACCTGTACACTCCGTAACTCCAGACCTGTACACTCCCGTAACTCCAGACCTGTACACTCCGTAACTCCAGTTCTGTTCATTCCGTAACTCAAGACCTGTACACTCCATAACACCAGACTTGTACACTCCGTAACACCGTCGGCAGTGAGCTTTAGCGAAACGGTGTtgactgtgtgtttttgtattaaaGATTTGTCTTATATTAAAGTGCCTTTTTTTTCAACAGCTTTTCAGCTCCAGACTTTATCATGATGCGTTTAAAGGAAAAACTGCTGTATTCTCTTTCACACTAGAAATGTTCTTATGCAAATTGACG
>TU20187
ttttttgatgcttcagtgagaatctacaatataatgtaaatagtcatgaaaaaataaaggaaacgcACTGAAtaagactgtatataaagtaaaaacgGCCGCAGGACCGTGATTTACTCGCTTGCTACCTTTAGCTTTGCCCTCCAACCCCCCAGATGGAGCCCAGACCCAGTTTCCCCACCGCCTGATTCGCTGTGGCGGGGTACTTAAGGTAATGGCGAACCACTGAGGAAGAAAAAAGAGCCGCTggcagcagaacagcagtgcaTTAGCGCTGATTGCGACCATTTCATATTGACCCGACCAATGATCTTTACGTGCCTCCAATACTGAGCGCCCCACATCTATCTGCTCTAATCCGACAGGTAGCTCTAATTAAGAAAAGGCTTAAGGCCTGCGTGCGCTGAGCTGAACCGGCGCCAACACGCCGCTGCCTCGTACCTCTAATAAGACATGCAAAGAAAAGAACGAAAGAATATACGAATAAACGATGGAAGAAGAACCGGCTTTAAGAAAACCAAAGAGCACCAAAAAAAGGCTTTGCCTTTGTAGCTAACTCTCTTTAAAAGGTGTGACCTTactacaaacaaaaactaataaaaaattagaaaagaaaTTAATCAGATATATTAAAGAAtcttatatcaatatttttagaaACCACTCGAAGTGCAGGTTCTGAATCTTCTGAATTTTTTCCCCATTGGTTTCTACACAGGAAGGACAGTCACAATGATAATTATAGATTTAtcatattcaaaataaaatggACATgtcctcaataatatttgatctTGATAATGCAGATCTCctctattgtgttttatttgaacACTATTGTAGCCAATGTTTCGATAAATTCGAGTCCATACACACAGTATGaactgcagtaggtgaagacATGGGAGGTGTATctactagtgcatcccaaaaaatagagaatatcattgaaaagtaacatttttatttcagtaatttagttaaaaatgtgaaactcgtatataatataacaacagCTAAACCTGTTGTTTCCACCCTCCAGCCTGCACTCCACCTGCTGTAATAGAAACTGCTGGTTTTTAGCATGCTGTTAGCATGTAGCACCACAGTGTTCTGTTCTGAATATTAATCAGAAAATCCCTTATCAGACGCCTTTTGGTTTTACCAGACCTGTACACTCCGTAACACCAGACCTGTACACTCCGTAACTCCAGACCTGTACACTCCGTAACTCCAGACCTGTACACTCCCGTAACTCCAGACCTGTACACTCCGTAACTCCAGTTCTGTTCATTCCGTAACTCAAGACCTGTACACTCCATAACACCAGACTTGTACACTCCGTAACACCGTCGGCAGTGAGCTTTAGCGAAACGGTGTtgactgtgtgtttttgtattaaaGATTTGTCTTATATTAAAGTGCCTTTTTTTTCAACAGCTTTTCAGCTCCAGACTTTATCATGATGCGTTTAAAGGAAAAACTGCTGTATTCTCTTTCACACTAGAAATGTTCTTATGCAAATTGACG

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20185 False 1529 lncRNA 0.40 2 31877805 31879448
TU20186 True 1902 lncRNA 0.52 2 31877805 31879843
TU20187 False 1530 lncRNA 0.54 3 31877805 31879448

Neighbor

gene id symbol gene type direction distance location
LOC107197536 LOC107086207 coding downstream 655382 31216232 ~ 31222423 (-)
LOC103034575 LOC103034575,LOC108414240,LOC108256545,LOC107706261,LOC107710337,LOC107654753,LOC107688361,LOC107592060 coding downstream 752659 31106308 ~ 31125146 (-)
LOC103047264 LOC108275079,LOC107710336,LOC107688362,LOC107706145,LOC107591988,LOC107654751 coding downstream 794513 31058768 ~ 31083292 (-)
LOC103046348 NA coding downstream 907647 30967269 ~ 30970158 (-)
LOC111193897 LOC108413061 coding downstream 910863 30964548 ~ 30966942 (-)
pdlim7 pdlim7 coding upstream 951 31880794 ~ 31943297 (-)
higd2a higd2a coding upstream 75763 31955606 ~ 31958456 (-)
rnf44 rnf44,LOC107749756,LOC107677379 coding upstream 93749 31973592 ~ 31995512 (-)
abhd18 abhd18,LOC107595739,LOC107653339,LOC107677374,LOC107750342,LOC107587096 coding upstream 166266 32046109 ~ 32055172 (-)
dgkq dgkq,LOC107595737,LOC107749781 coding upstream 194323 32074166 ~ 32119158 (-)
G15037 NA non-coding downstream 844 31845182 ~ 31876961 (-)
G15023 NA non-coding downstream 256508 31529337 ~ 31621297 (-)
G14885 NA non-coding downstream 609712 31267660 ~ 31268093 (-)
G14883 NA non-coding downstream 616819 31260768 ~ 31260986 (-)
G14882 NA non-coding downstream 621601 31255985 ~ 31256204 (-)
G15063 NA non-coding upstream 114790 31994633 ~ 31995062 (-)
G15074 NA non-coding upstream 153208 32033051 ~ 32040230 (-)
G15078 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766,LOC107669968,LOC107734024 non-coding upstream 162498 32042341 ~ 32061852 (-)
G15049 NA non-coding upstream 189319 32069162 ~ 32086925 (-)
G15050 NA non-coding upstream 241433 32121276 ~ 32133782 (-)
G14839 NA other downstream 822302 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 953718 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 954556 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 985157 30889606 ~ 30892648 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other downstream 1151884 30674060 ~ 30725921 (-)
nfkb1 nfkb1,LOC106536450 other upstream 242379 32122222 ~ 32159963 (-)
hopx hopx,LOC107552340 other upstream 934205 32814048 ~ 32820804 (-)
G15497 NA other upstream 2254749 34134592 ~ 34136732 (-)
evc2 NA other upstream 2271980 34151823 ~ 34172017 (-)
G15498 NA other upstream 2361483 34241326 ~ 34242318 (-)

Expression


Co-expression Network