G15078 (smim13,si:dkey-206d17.5,LOC107559689,LOC107551766,LOC107669968,LOC107734024)


Basic Information

Item Value
gene id G15078
gene name smim13,si:dkey-206d17.5,LOC107559689,LOC107551766,LOC107669968,LOC107734024
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32042341 ~ 32061852 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU20261
AATTTATTATGAAGGGGAAAATACAGCTACTgccattaaagaaaaaaaaacatgaaccaaAAAATAAGGATTCTAAAATCTAAATATGGCAGCTCACATTGCTAACTATGCCAGTTCACTGGACGCAGGTGGACGCAGACGCTTTCTAGGGATATTCTGGTCAGGTAGGAGGATGGATTTGCCCCACAGGTCACAGATCTGAGCTCTTTAGATCCGTGTTCATCAGCTTCATCTACTGTAATGCATTATTCTACAGCTTGGCTTTAGAAAAGCAGGTCCTAGATCTGGGTTTAAAAGGGCAAGTCCAACCTCCAGGCTCAGAGGCAACCATGGCAGCTATATTAAAAGCACTATGCCATGTCTGGAGCACCAGGATGCCAGCATTAGCACGAAGAACACCTCACTGACATCATCTCAAAATCATCTTAAATCATCTGCTGCTGGAGGGTTTCAGCTTATTCTATGGCCTCGCTGAAGGTGGTTgagttgtttttctttctgaagCTGGAATTTGACATATTTGTGTTCTTTTCCATTGCACATCATGAGAAAACGTCAGGGTTAAAAGAGTTAGAGTTAGTGTACAGAACTGCAAGATCATCCGAtccctccttttctttctctttctctctcttttttttctctggtcATGAAGTAACTGATGAATGAAGTGCAATCATACGCTCTCTAATTAGCAGTATTTGTGAACTCACACTAAATGAAATGAGTAGCAGCATGACAGCAAAAGCCAGTTaggccttttttttatttatttatttatttattttttttttagagctgttgCACACATTCACTAATCAAACTGAAGGAAGGGGTTTGAGACAGTCCACTAGAGCTCCGTCAGCTCCACGAGCTTCAAATCAGGTCCATATCCTGGACCTGCTACTGTCCAGAGCAGAACAGAGACGTCTAGAACCGAGGAAAAGCCTGGAGAAAAGGTGGGAAGGTGGGATTAAGGTGAGTTTAGAGCAGCAGGACGTTCTGCCCGGATCTCTGGTAAACTGTCGAGGcaggtttatattttttatgtagtgcTGCTCGAAGGGGCGACTCTTTGGCGGGCAGTCTTGGGCCGGTGTCGGGGGGTCGACGGGGAGCTGCGCTCGCTCTCTGATTCACACGGTTCCGTTTCGGCCTGGGGAGAACCCGTGTCCCCCACCAGCTCTCTCAGGAACTTAAACTTGGACAGGAAGAGCTGCCACACCACGTACCAACCGAAAAGCATGAAGAGCAGCACACAGACCAGCGTGGCCACGATGACCAGCAGTGTTAATCCCACACTCTGCCACATTGCTTCTTTCTACTGTAGAACACAAACATTCACTCTGTTACACACCGGCATCCTGAAGCCATGATATattattaaagtgttaaacaaaccaaaatactgatgagtgccagtttt
>TU20262
ttattatttttaattttttttagagctgttgCACACATTCACTAATCAAACTGAAGGAAGGGGTTTGAGACAGTCCACTAGAGCTCCGTCAGCTCCACGAGCTTCAAATCAGGTCCATATCCTGGACCTGCTACTGTCCAGAGCAGAACAGAGACGTCTAGAACCGAGGAAAAGCCTGGAGAAAAGGTGGGAAGGTGGGATTAAGGTGAGTTTAGAGCAGCAGGACGTTCTGCCCGGATCTCTGGTAAACTGTCGAGGcaggtttatattttttatgtagtgcTGCTCGAAGGGGCGACTCTTTGGCGGGCAGTCTTGGGCCGGTGTCGGGGGGTCGACGGGGAGCTGCGCTCGCTCTCTGATTCACACGGTTCCGTTTCGGCCTGGGGAGAACCCGTGTCCCCCACCAGCTCTCTCAGGAACTTAAACTTGGACAGGAAGAGCTGCCACACCACGTACCAACCGAAAAGCATGAAGAGCAGCACACAGACCAGCGTGGCCACGATGACCAGCAGTGTTAATCCCACACTCTGCCACATTGCTTCTTTCTACTGTAGAACACAAACATTCACTCTGTTACACACCGGCATCCTGAAGCCATGATATattattaaagtgttaaacaaaccaaaatactgatgagtgccagtttt

Function

symbol description
smim13 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM13 (small integral membrane protein 13).

NR:

description
PREDICTED: small integral membrane protein 13-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20261 True 1426 lncRNA 0.57 3 32042341 32045045
TU20262 False 653 lncRNA 0.49 4 32042341 32061852

Neighbor

gene id symbol gene type direction distance location
rnf44 rnf44,LOC107749756,LOC107677379 coding downstream 46829 31973592 ~ 31995512 (-)
higd2a higd2a coding downstream 83885 31955606 ~ 31958456 (-)
pdlim7 pdlim7 coding downstream 99044 31880794 ~ 31943297 (-)
LOC107197536 LOC107086207 coding downstream 819918 31216232 ~ 31222423 (-)
LOC103034575 LOC103034575,LOC108414240,LOC108256545,LOC107706261,LOC107710337,LOC107654753,LOC107688361,LOC107592060 coding downstream 917195 31106308 ~ 31125146 (-)
dgkq dgkq,LOC107595737,LOC107749781 coding upstream 12314 32074166 ~ 32119158 (-)
LOC103039786 ube2d2l,ube2d3,ube2d2,UBE2D2,ube2d1,LOC103039786,LOC106611705,LOC107585246,LOC105029919 coding upstream 98967 32160819 ~ 32172940 (-)
polr2b polr2b,LOC102791558 coding upstream 560329 32622181 ~ 32638918 (-)
rest NA coding upstream 587211 32649063 ~ 32658650 (-)
LOC103031569 NA coding upstream 672433 32734285 ~ 32750765 (-)
G15074 NA non-coding downstream 2111 32033051 ~ 32040230 (-)
G15063 NA non-coding downstream 47279 31994633 ~ 31995062 (-)
G15022 NA non-coding downstream 162498 31877805 ~ 31879843 (-)
G15037 NA non-coding downstream 165380 31845182 ~ 31876961 (-)
G15023 NA non-coding downstream 421044 31529337 ~ 31621297 (-)
G15049 NA non-coding upstream 7310 32069162 ~ 32086925 (-)
G15050 NA non-coding upstream 59424 32121276 ~ 32133782 (-)
G15090 NA non-coding upstream 285498 32347350 ~ 32348794 (-)
G15095 NA non-coding upstream 388506 32450358 ~ 32450563 (-)
G15206 NA non-coding upstream 502510 32564362 ~ 32621435 (-)
G14839 NA other downstream 986838 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 1118254 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 1119092 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 1149693 30889606 ~ 30892648 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other downstream 1316420 30674060 ~ 30725921 (-)
nfkb1 nfkb1,LOC106536450 other upstream 60370 32122222 ~ 32159963 (-)
hopx hopx,LOC107552340 other upstream 752196 32814048 ~ 32820804 (-)
G15497 NA other upstream 2072740 34134592 ~ 34136732 (-)
evc2 NA other upstream 2089971 34151823 ~ 34172017 (-)
G15498 NA other upstream 2179474 34241326 ~ 34242318 (-)

Expression


Co-expression Network