nfkb1 (nfkb1,LOC106536450)


Basic Information

Item Value
gene id nfkb1
gene name nfkb1,LOC106536450
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32122222 ~ 32159963 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU20269
GACCATTAACTCGATATCGCCTCCGATCCGCCGGATAATTCACCCGCACTGCGCCCGAGCCTCTCCTCCGCACCCAGCCGAACGCCCGCCCGGCCGGAGCTCTGCGCCACCCGCGGGGCTGCATGGCTCCTTACCCGCCTGCCTGAGCTCTCTCTGCGGACTGACAGCACATGTGGAGCGGCCAGACACACCAGCACAGGAACCATGACGGAAGAGGACTCATATCTACACCCAGAGTTCTGTCTAGATTTTGCTCCAGCGTGGAGTTACCCAACAGACCCACATTTCCAGCAGCCTATTCCTCACTCCAACACACCCAGAATAGATGGACCCTGTCTCCAAATTATTGAACAACCAAAACAGCGAGGTTTCAGGTTTCGTTATGGCTGTGAAGGCCCCTCCCATGGTGGACTCCCCGGAGCCTCGAGTGAGAAGAACAGAAAGACGTACCCTCAGGTCAAGATCTGTAATTATCAAGGTCCAGCGAAGGTCGTGGTTCAGCTGGTGACCAACACCAAACTGCCCCAGCTGCACGCGCACAGCCTGGTGGGGAAGCAGTGTGAGAAGGGCGTCTGCATCGCAGACCTGCAGCCCAAAGACTCCTGCATCAGTTTTCCTAATTTAGGGATCTTGCACGTGACTAAAAAGAATGTGACTAAGACTCTGGAGGACCGGATGAGCGAGGCGTTCAGGATGGCGTATAACTGTGGAGTAGTGATCCACCCGGAAATCGACTCTCTCCAAGGAGAAACACGAATTCCCCGAGATCTCACAGAGCAGCACAGGATGCTGATCAGCACTGCAGCCAGTCACCAGGCTAAAGACATGGACCTGAGCGTGGTCAGACTGATGTTCACAGCGTTTCTGCCGGACGGCGAGGGCGGCTACACCCGCAGGCTGGACCCAGTCATATCCGAACCCATTTATGACAGCAGTGAG
>XM_022676958.1
AGGAGAAGTTGCGTTACGTCACAGGGAATTTCCAGTAAGGAAGTGAACTTTTCTTTACAAACAGATCGATCCGCGCTCGAGCGGCGACCATTAACTCGATATCGCCTCCGATCCGCCGGATAATTCACCCGCACTGCGCCCGAGCCTCTCCTCCGCACCCAGCCGAACGCCCGCCCGGCCGGAGCTCTGCGCCACCCGCGGGGCTGCATGGCTCCTTACCCGCCTGCCTGAGCTCTCTCTGCGGACTGACAGCACATGTGGAGCGGCCAGACACACCAGCACAGGAACCATGACGGAAGAGGACTCATATCTACACCCAGAGTTCTGTCTAGATTTTGCTCCAGCGTGGAGTTACCCAACAGACCCACATTTCCAGCAGCCTATTCCTCACTCCAACACACCCAGAATAGATGGACCCTGTCTCCAAATTATTGAACAACCAAAACAGCGAGGTTTCAGGTTTCGTTATGGCTGTGAAGGCCCCTCCCATGGTGGACTCCCCGGAGCCTCGAGTGAGAAGAACAGAAAGACGTACCCTCAGGTCAAGATCTGTAATTATCAAGGTCCAGCGAAGGTCGTGGTTCAGCTGGTGACCAACACCAAACTGCCCCAGCTGCACGCGCACAGCCTGGTGGGGAAGCAGTGTGAGAAGGGCGTCTGCATCGCAGACCTGCAGCCCAAAGACTCCTGCATCAGTTTTCCTAATTTAGGGATCTTGCACGTGACTAAAAAGAATGTGACTAAGACTCTGGAGGACCGGATGAGCGAGGCGTTCAGGATGGCGTATAACTGTGGAGTAGTGATCCACCCGGAAATCGACTCTCTCCAAGGAGAAACACGAATTCCCCGAGATCTCACAGAGCAGCACAGGATGCTGATCAGCACTGCAGCCAGTCACCAGGCTAAAGACATGGACCTGAGCGTGGTCAGACTGATGTTCACAGCGTTTCTGCCGGACGGCGAGGGCGGCTACACCCGCAGGCTGGACCCAGTCATATCCGAACCCATTTATGACAGCAGTGAGTGTCCCCAAGttctgtttatttcatttatatttatcacAAAAGTGATAAAATTCTCACCAAATGAATCGGTAAACGTAGAGCAGATGTCTGAGCTTAGTCTGGTTCTCCATCAGGAACACAGTCTAATGGAGGCACCATTTTCTATACATACACAAACCCTGGCGTTTTCACAGATATTCAAATTTGAgagtgtgggtcattgtttgtgtgtgtttgtggttgtaGATGATATTCAGGTGCGTTTTTACGAGGATGACGAGACGGGAATCGCCTGGGAGGCGTTTGGAGATTTCTCTCCTACAGATGTTCACCGACAGTTTGCCATCGTCTTCAAGACGCCTAAGTACCGCGACCAGAACCTGCAGAAGCCCATCTCAGTGTTCGTCCAGCTCAAGAGGAAATCCGACCACGAGACGAGCGAGCCCAAACCCTTCACTTACCACCCGCAGATCATCGATAAGGAGGAGGTTCAGAGGAAGCGGCAGAAGACCCTGCCCAACTTCCCGGACTACGGAGGTGCgggaggaggaggtgggggcATGTTTAGAGGAACCGGAGGCGGTCCTGCTACAGGGGGCGGGCAcggtggaggaggaggtggagggcaCTACTACCAGGGGTATTCTAATTTCAACAACTTTAACTCTGGCTACGGTTTTCCCCCCGCCATGGGTGGAGGCGGGACCAGCATCAAGCATGCGACTCGTGGGCCAGTGGAAGATACTGATGAGGACAGTGACAGTGACCTGGATGATGATCAGGGTTCAGCAGGAGCCGTCCAGGGCTATGTCCAGTCTGGAGCTGCTGGGGTGGATGAGGAGAGCGAGGGCTCACAAGAGCTCAGGCCTAAAGagtgtgtgtttgagcctCGGTTAGCTGAGCTGGCGGAGAGACATGCCTGCGCTCTGTTTGATTATGCTGTGACCGGTGACGCTCGCAGGCTGCTGGCTCCACAGCGCCCCCTAATGTCCACTCAGGATGAAAACGGAGACACGGGACTCCACCTGGGTGTGATCCACAGTCAGACGGATGCAGTGAAGACTCTAGCGGAGGTGATTTCAGCTATTCCAGGAGAGGATGTGCTTAACATGAGGAACGACCTGTATCAGACGCCGCTGCATCTGGCGGTGGTGACTCAGCAGAAAGAGGCGGCGGAGGTGTTACTGACGGCCAGAGCAGACGTCGCTCTCACTGATCGCAACGGAAACACAGCGCTGCATTTAGCAGCCCAgcagaaagaaggagagatggTGCGGTTACTGCTGCACCACGACAACATGCTGGAGATGACCAGCGTACCCAACACAGCAGGTCTGTGTCCGCTGCACCTGGCTGTACTGGCTAACAGTCTGAATAGCGTGAGGGCGCTGCTGGAGGGCGGGGCTAGTGTGGAGATTCAGGAGCTCACCTGTGGTCGCACGCCGCTTCACCTAGCAACCGAACGTGACAACGTGTCCCTCGCAGGATGCCTACTGCTGGAGGGGGATGCTGATGTTGACAGTGTCACATATAATGGCTCCACCCCTCTCCACATCGCAGCGGGGCGGGGCTCGCTCAAACTCAGCGCTCTGCTGGTGGTGGCAGgggCGGACCCTCATAAAGAGAACTATGAGCCACTGTTCTTCAGAGACGAGGAGTGCTGCACCACAAACGAGGAAGAGCAGGAGGATGAGGGGTATATACCAGGGACTACCCCGCTCAACATGGCTGCATCTCCTGAGgtgcgGGAAATTCTGAATGGTAAAAAGTACCAGCCCACCACCGTCTTTGTACCTCCACAAGGAGACATGCGTAGTCTGAGTGTGGAGACGAAGCGGGCGCTGTGCCAATGTCTGGAGGAGTCGGTGGGTGGGTGGGAGAGTCTGGCACACGCACTGGGACTCGGCATCCTCACCAACGCCTTCTGCCTCAGCCCCCGGCCCGCCTCCACGCTGCTGGATAGCTATGAGGTTTCGGGTGGGACGGTTCGAGAGCTCTTATCAAGTCTGAGGAGTATTGGTAACAGAGGCGCTGTCAGTATCCTGCaggaacactgtgtgtgtgaagaaaACAGCGACAACACACACCTCACCTACACACCGCCTGgtcagGTGGAGTGTGAGGAGGGGATGCGGGAGCTGAAGTTAGCTGCTCTGGATGAGGGAGGAGTTTGTGACAGTGGGGTCGAGACGTCCTTCCAGAGGCCGAGTTTCAGTCTGGCTGATTCGCTCTGAGGAGAGCTGGACCTGCGGCTTCATCCTGCCGACCTGCTGCAGTCTGACCCTTCATCTCTTCAGTTCGGACCCCAAAATACTGACCCTGATGCTCACCTTCGCCCTCACCTTCATCCTCACCTTGACGTTCAGCTCAGGAGCCCCCCTGCACCTACCCCACGTCCCTGTGGTCCCCCCGGGGCTGATACGACCCCTCTGAACCAGAATCATGATTGGCAGAGACCGCTGTGGAAGCTCTGGGGAAGCCACACCCATTATGCAGATCACAGGCGGCCGATCCTCATTGGTCGAGGAGCTCTttagttgttgttgttatttttctcaGTATATGCATTTTACGATGTCCGCTCTCGTTTGAACGTGTCCCAGTTATATGtaagacttttatttaattgttggcttgtatttttgttttttattctatgcgttttttgtttttatggtttgtatgattttttttaaaaagctaaagTTAGACTTTGGTGATTTTGATGACATCACCTGTAATGCATTTGTGATGCGTTTATCTCTCGTTATACACAGAAGATGAGGCAGGTTATGGTGTGTTTGGGTTGTGCTTTGATCattctcctaaaaaaaaataatgttctttAAGTGACAGAAAGAGCAGAAAATGTATGCAGTATTTGGgtataaaacagtagtttttgATGCACTACTGTTAATCCTGCTCTAAGACCAGGCTAATGTTACCTAGGTCTGATTAAATCAGAACCTGACATATCGTAGATACACACACTCCTTAAAAGGAaatcaagtttaaaaaaatatatattccagTATGAGCATGTCTGTTGGTCCATATATTAGGAAATATATGTACTGGTGATGGCGCAAATGAACTGAAATCAGCCATAatgtaaaactatatattaCACCCATAGGAATGGAATAATTTTAGTAGTAACTTATATTCACAGTGAATTTATACATTTAAGTATAATGTTAATGtgaacacatttatatatttagacttttttttacaataatttgAATGTAATAGGAATCTGGAAGTTGTTCCTTACATTGCATTCAAATTTGATTACAAATTAACCTAGATttgaatttgaaataaaatcttcttttattgttttttatagaTCTGTAAAGTTGCCAGAAACCTTCTTTATTTTGGAGATACGAGTAACATGCAAGTTTTTGCATGTTATTGATGATTATACACAACCTTGAACAACAACACAGCTGTGACTCGCCGTCTTCCTGTGTATAAACGAGTGATAAAGATATTTGCCTAGAAATTTGGAGTGTAATTTTGGAACATTCAGGAAtatttgatgttattttatgttatttgatgtattttttttaaaatgggtTTTAAGTGAATCCTGCCTCAGGAATTCTGCACTCCCGGACTGCGATTTGGAACACAGCCGCCCTGGTTTTGTGTCGTGCCTCGATGGccaaagctctgcatctgtagATCACTCCTGGACCTGGACGAGCTTTAGTTCTCGCAGCCTCTGGACCAGTAGCTTcgtgatttttgtatttttgagggGTGAAGGATGTGTGTGGAGCTGCACAGAGACTCTGGTGATCTTCATTTATCTTCTGGAAgcttctcgctctctctctctctctctctctctctctcgcaggtcttccctctctcgctctgcaCTGGTTTTATATGTGCAGGTTCTCTCGGTTCGTGGTGCTAAATGTTGTAATGTTATTATGAGGAAccgttgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgtgagaGAACCTGCTCCTCTACCCGAGTGTATTTCATAAGCTGTGAGAGAAACTCCATGTTTGTTAacattgtttagttttttttgtgttaacagatacacacacacacacacacacacacacacaccaatctcTCCTACCTAAAATACTGGAACATTTACTAGGACTCCTcctacagctctgcaaaaaaa

Function

symbol description
nfkb1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); common variable immunodeficiency; melanoma; prostate cancer; and tropical spastic paraparesis. Orthologous to several human genes including BICDL1 (BICD family like cargo adaptor 1).

NR:

description
nuclear factor NF-kappa-B p105 subunit isoform X2

GO: NA

KEGG:

id description
K02580 NFKB1; nuclear factor NF-kappa-B p105 subunit

RNA

RNA id representative length rna type GC content exon number start site end site
TU20269 False 939 TUCP 0.34 8 32142728 32159878
XM_022676958.1 True 5215 mRNA 0.49 24 32122222 32159963

Neighbor

gene id symbol gene type direction distance location
dgkq dgkq,LOC107595737,LOC107749781 coding downstream 3064 32074166 ~ 32119158 (-)
abhd18 abhd18,LOC107595739,LOC107653339,LOC107677374,LOC107750342,LOC107587096 coding downstream 67050 32046109 ~ 32055172 (-)
rnf44 rnf44,LOC107749756,LOC107677379 coding downstream 126710 31973592 ~ 31995512 (-)
higd2a higd2a coding downstream 163766 31955606 ~ 31958456 (-)
pdlim7 pdlim7 coding downstream 178925 31880794 ~ 31943297 (-)
LOC103039786 ube2d2l,ube2d3,ube2d2,UBE2D2,ube2d1,LOC103039786,LOC106611705,LOC107585246,LOC105029919 coding upstream 856 32160819 ~ 32172940 (-)
polr2b polr2b,LOC102791558 coding upstream 462218 32622181 ~ 32638918 (-)
rest NA coding upstream 489100 32649063 ~ 32658650 (-)
LOC103031569 NA coding upstream 574322 32734285 ~ 32750765 (-)
LOC103039156 sec24b,LOC108434542,LOC107596339,LOC107731363,LOC107662171,LOC107704651 coding upstream 674533 32834496 ~ 32858295 (-)
G15049 NA non-coding downstream 35297 32069162 ~ 32086925 (-)
G15078 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766,LOC107669968,LOC107734024 non-coding downstream 60370 32042341 ~ 32061852 (-)
G15074 NA non-coding downstream 81992 32033051 ~ 32040230 (-)
G15063 NA non-coding downstream 127160 31994633 ~ 31995062 (-)
G15022 NA non-coding downstream 242379 31877805 ~ 31879843 (-)
G15090 NA non-coding upstream 187387 32347350 ~ 32348794 (-)
G15095 NA non-coding upstream 290395 32450358 ~ 32450563 (-)
G15206 NA non-coding upstream 404399 32564362 ~ 32621435 (-)
G15217 NA non-coding upstream 452918 32612881 ~ 32698968 (-)
G15233 NA non-coding upstream 556667 32716630 ~ 32716898 (-)
G14839 NA other downstream 1066719 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 1198135 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 1198973 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 1229574 30889606 ~ 30892648 (-)
LOC103043612 LOC108259106,LOC108412590,LOC107654745,LOC107710331,LOC107602379,LOC105006578 other downstream 1396301 30674060 ~ 30725921 (-)
hopx hopx,LOC107552340 other upstream 654085 32814048 ~ 32820804 (-)
G15497 NA other upstream 1974629 34134592 ~ 34136732 (-)
evc2 NA other upstream 1991860 34151823 ~ 34172017 (-)
G15498 NA other upstream 2081363 34241326 ~ 34242318 (-)

Expression


Co-expression Network