G15090


Basic Information

Item Value
gene id G15090
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32347350 ~ 32348794 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU20275
TTTTCAAGCCAAATGTAATCTTTATTTGTCTGTTTCTGTACAAAAAGCACgttatcacagaaaaaaaaaaggaaacggaatgaacggaaaaaacggagggaaataaaataataagaataagaacaTGCAGTATGTACAGCACGGTGAGAGAGTGAGCGCCAAGAGTCTCACCTTCAATCCTAAAGACATGAAATAACATTGTGCTTTGATATACTttcaatatatttcatatttcacaaAGATCAAAAAAGCAGTACCTCTAGCCCCGCCCACCCCCGAGCCCCGCCTTACAAAAGAACCGAGTACGAAACCAGCGCTAAAGACCAAGCCACGCCCAGTATCTCACACCCTATCGAAAAGTTGCCGCCGCGCTGacggactgtgtgtgtgtgtgtatatatatgtgtgtgtgtgtataagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtatagggaatttacatgtatttttgtaCAGTGGGTCTCCCGCTGCTCTCCTCACCTGCGCTTCTCCACAACCTGCGACCACGTTagtattttttcacatttacagagtattttcttcatctacaaaacacacaatcacacactcacacactctctctctcacacacacacacacttcctcacacacacccgcACAGGGAACATAAATAATGTAGTGAGGATTTTTCAGCTCCAACAGTTAAAGTCGTCTAAGTCGTTTTCGTCCCCACAGTGTTTCAGAGCCGCTGGGTTTAAAGGcgttttctatttttcttctttttcttcctaaTCCTTATATATGACTTTACTCCTAAAACTGACctctacatatatttatttagacctGCACCAACAGGGTCCACTCTAAAACCTCGGGAGACGCCTTCACTCTGCCTTTAAACCTACTGCCAGAACTTATACAAAACATATCTGTCctacaaataatataattagacattaaatccaattaaatCAGTGTAACAAACAGAAATCtcccaaacaccacacacacacacttaacccaGAGcgataaactcaaataaaaccaTTGGGATGGTTTGAAATGTGCACCAATcagccattacattaaaaacactcaATTTGTTTTCTGATGCGAAGCCATTTATCtggtttctttttatatttgttgtgtCGCTAAATAAACGCAAATCCCCACTCTTATATCACAGAGCTAGCAAGTTAGCATGCTAATTTGGAAATGAAGCATGCTAACTAAATGCAAAGTAGAGAATCATGAGTTTCAACATCACTACCCCAGTGTTACTGCAGcggatagcaaaaaaaaaatatcggtAGCACGCTGGCTATAGTGCCGGTCCCACACTGCTACCAATGTCTGAAGAGATCCAGACACCAAAGCACTGGACACACATCTTGGCACAATGGGGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20275 True 1399 lncRNA 0.41 2 32347350 32348794

Neighbor

gene id symbol gene type direction distance location
LOC103039786 ube2d2l,ube2d3,ube2d2,UBE2D2,ube2d1,LOC103039786,LOC106611705,LOC107585246,LOC105029919 coding downstream 174410 32160819 ~ 32172940 (-)
dgkq dgkq,LOC107595737,LOC107749781 coding downstream 228192 32074166 ~ 32119158 (-)
abhd18 abhd18,LOC107595739,LOC107653339,LOC107677374,LOC107750342,LOC107587096 coding downstream 292178 32046109 ~ 32055172 (-)
rnf44 rnf44,LOC107749756,LOC107677379 coding downstream 351838 31973592 ~ 31995512 (-)
higd2a higd2a coding downstream 388894 31955606 ~ 31958456 (-)
polr2b polr2b,LOC102791558 coding upstream 273387 32622181 ~ 32638918 (-)
rest NA coding upstream 300269 32649063 ~ 32658650 (-)
LOC103031569 NA coding upstream 385491 32734285 ~ 32750765 (-)
LOC103039156 sec24b,LOC108434542,LOC107596339,LOC107731363,LOC107662171,LOC107704651 coding upstream 485702 32834496 ~ 32858295 (-)
LOC103029668 NA coding upstream 511889 32860683 ~ 32865337 (-)
G15050 NA non-coding downstream 213568 32121276 ~ 32133782 (-)
G15049 NA non-coding downstream 260425 32069162 ~ 32086925 (-)
G15078 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766,LOC107669968,LOC107734024 non-coding downstream 285498 32042341 ~ 32061852 (-)
G15074 NA non-coding downstream 307120 32033051 ~ 32040230 (-)
G15063 NA non-coding downstream 352288 31994633 ~ 31995062 (-)
G15095 NA non-coding upstream 101564 32450358 ~ 32450563 (-)
G15206 NA non-coding upstream 215568 32564362 ~ 32621435 (-)
G15217 NA non-coding upstream 264087 32612881 ~ 32698968 (-)
G15233 NA non-coding upstream 367836 32716630 ~ 32716898 (-)
LOC103032939 NA non-coding upstream 417303 32766097 ~ 32766565 (-)
nfkb1 nfkb1,LOC106536450 other downstream 187387 32122222 ~ 32159963 (-)
G14839 NA other downstream 1291847 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 1423263 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 1424101 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 1454702 30889606 ~ 30892648 (-)
hopx hopx,LOC107552340 other upstream 465254 32814048 ~ 32820804 (-)
G15497 NA other upstream 1785798 34134592 ~ 34136732 (-)
evc2 NA other upstream 1803029 34151823 ~ 34172017 (-)
G15498 NA other upstream 1892532 34241326 ~ 34242318 (-)

Expression


Co-expression Network