hopx (hopx,LOC107552340)


Basic Information

Item Value
gene id hopx
gene name hopx,LOC107552340
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32814048 ~ 32820804 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU20525
TGACGTCAGGGATCAAATATTATCTGACAGCAGAAGCAGCGTGAACATGGAGTCTGGAGATCACCACAGCATGGCATCTGGTGGGCAGCGAGCGCTGGCAGAGGAGCAGGTTCGCGTTCTGGAGGAGAACTTTACTAAAGTTACTAAACACCCCGACCAAACCACACTGATGCTGATCGCCGCCGAGGCCGGACTCACCGAAGAGGAGACAGCGaagTGGTTTAGGAAGCGTAATGCTCAGTGGAGGCAGTCGGAGGGTTTGCCGGCTGAACTGGGATCAGTAAAAGACTGAGGACTGGAAAATCTCATTACCAGCACacctctatctctccatctctctctctctccatggttggcctcctgtctctctctctctaatctgCCGTTCTTCATCCATTCTTCAGCAGAGGAGCTCCTCCATCCTCCCGCCTCCCTGCAGAGCTTCTAAAAGACTGTTCactttcatttgtttgtttattggtttgtttgtttgtttgtttattggtttgtttgtttgtttgtttattggtttgtttgtttgtggcgTTTCTCTGTACTCTGGATCTGTGTTAATAAGCTGAATGTGAATGCTATATTGTGtacgttttattttattgcagataTAACTctcatgtttaaataaat
>TU20526
CCACATGCTCAGCAGCAGAACTCTCTCACTGCGCTGGAGCTCTCGCGCCCTTTCCCTTCTCCTACTTTATTACCCAGCAGCCCCTTCCCTACTctcctctcgcgctctctctctcagtctctctctctctctctctctctgccctctCCAGCATGGCATCTGGTGGGCAGCGAGCGCTGGCAGAGGAGCAGGTTCGCGTTCTGGAGGAGAACTTTACTAAAGTTACTAAACACCCCGACCAAACCACACTGATGCTGATCGCCGCCGAGGCCGGACTCACCGAAGAGGAGACAGCGaagTGGTTTAGGAAGCGTAATGCTCAGTGGAGGCAGTCGGAGGGTTTGCCGGCTGAACTGGGATCAGTAAAAGACTGAGGACTGGAAAATCTCATTACCAGCACacctctatctctccatctctctctctctccatggttggcctcctgtctctctctctctaatctgCCGTTCTTCATCCATTCTTCAGCAGAGGAGCTCCTCCATCCTCCCGCCTCCCTGCAGAGCTTCTAAAAGACTGTTCactttcatttgtttgtttattggtttgtttgtttgtttgtttattggtttgtggcgTTTCTCTGTACTCTGGATCTGTGTTAATAAGCTGAATGTGAATGCTATATTGTGtacgttttattttattgcagataTAACTctcatgtttaaataaat
>TU20527
CCACATGCTCAGCAGCAGAACTCTCTCACTGCGCTGGAGCTCTCGCGCCCTTTCCCTTCTCCTACTTTATTACCCAGCAGCCCCTTCCCTACTctcctctcgcgctctctctctcagtctctctctctctctctctctctgccctctCCAGCATGGCATCTGGTGGGCAGCGAGCGCTGGCAGAGGAGCAGGTTCGCGTTCTGGAGGAGAACTTTACTAAAGTTACTAAACACCCCGACCAAACCACACTGATGCTGATCGCCGCCGAGGCCGGACTCACCGAAGAGGAGACAGCGaagTGGTTTAGGAAGCGTAATGCTCAGTGGAGGCAGTCGGAGGGTTTGCCGGCTGAACTGGGATCAGTAAAAGACTGAGGACTGGAAAATCTCATTACCAGCACacctctatctctccatctctctctctctccatggttggcctcctgtctctctctctctaatctgCCGTTCTTCATCCATTCTTCAGCAGAGGAGCTCCTCCATCCTCCCGCCTCCCTGCAGAGCTTCTAAAAGACTGTTCactttcatttgtttgtttattggtttgtttgtttgtttgtttattggtttgtttgtggcgTTTCTCTGTACTCTGGATCTGTGTTAATAAGCTGAATGTGAATGCTATATTGTGtacgttttattttattgcagataTAACTctcatgtttaaataaat
>XM_022676487.1
CAACTTTCCTACAGGCTCAAAGTACACGAGCAGCCTGACGTCAGGGATCAAATATTATCTGACAGCAGAAGCAGCGTGAACATGGAGTCTGGAGATCACCACAGCATGGCATCTGGTGGGCAGCGAGCGCTGGCAGAGGAGCAGGTTCGCGTTCTGGAGGAGAACTTTACTAAAGTTACTAAACACCCCGACCAAACCACACTGATGCTGATCGCCGCCGAGGCCGGACTCACCGAAGAGGAGACAGCGaagTGGTTTAGGAAGCGTAATGCTCAGTGGAGGCAGTCGGAGGGTTTGCCGGCTGAACTGGGATCAGTAAAAGACTGAGGACTGGAAAATCTCATTACCAGCACacctctatctctccatctctctctctctccatggttggcctcctgtctctctctctctaatctgCCGTTCTTCATCCATTCTTCAGCAGAGGAGCTCCTCCATCCTCCCGCCTCCCTGCAGAGCTTCTAAAAGACTGTTCactttcatttgtttgtttattggtttgtttgtttgtttgtttattggtttgtttgtttgtttgtttattggtttgtttgtttgtggcgTTTCTCTGTACTCTGGATCTGTGTTAATAAGCTGAATGTGAATGCTATATTGTGtacgttttattttattgcagataTAACTctcatgtttaaataaataaatattgtatatatgtttaactgaa

Function

symbol description
hopx Predicted to enable DNA binding activity. Acts upstream of or within heart development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in hatching gland; heart; sensory system; and solid lens vesicle. Orthologous to human HOPX (HOP homeobox).

NR:

description
PREDICTED: homeodomain-only protein

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24897 HOPX; homeodomain-only protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU20525 False 645 TUCP 0.32 3 32814074 32820769
TU20526 False 695 TUCP 0.46 3 32814074 32819171
TU20527 False 699 TUCP 0.39 3 32814074 32819171
XM_022676487.1 True 706 mRNA 0.45 3 32814048 32820804

Neighbor

gene id symbol gene type direction distance location
LOC103031569 NA coding downstream 63283 32734285 ~ 32750765 (-)
rest NA coding downstream 155398 32649063 ~ 32658650 (-)
polr2b polr2b,LOC102791558 coding downstream 175130 32622181 ~ 32638918 (-)
LOC103039786 ube2d2l,ube2d3,ube2d2,UBE2D2,ube2d1,LOC103039786,LOC106611705,LOC107585246,LOC105029919 coding downstream 641108 32160819 ~ 32172940 (-)
dgkq dgkq,LOC107595737,LOC107749781 coding downstream 694890 32074166 ~ 32119158 (-)
LOC103039156 sec24b,LOC108434542,LOC107596339,LOC107731363,LOC107662171,LOC107704651 coding upstream 13692 32834496 ~ 32858295 (-)
LOC103029668 NA coding upstream 39879 32860683 ~ 32865337 (-)
LOC103029347 NA coding upstream 100221 32921025 ~ 32943593 (-)
LOC103028197 NA coding upstream 135327 32956131 ~ 32959840 (-)
LOC103027351 LOC108434533,LOC105893001 coding upstream 215045 33035849 ~ 33073381 (-)
G15249 NA non-coding downstream 18218 32795378 ~ 32795830 (-)
G15244 srp72,LOC107662169,LOC107552350,LOC107731365 non-coding downstream 19706 32784189 ~ 32794342 (-)
LOC103032939 NA non-coding downstream 47483 32766097 ~ 32766565 (-)
G15233 NA non-coding downstream 97150 32716630 ~ 32716898 (-)
G15217 NA non-coding downstream 115080 32612881 ~ 32698968 (-)
G15273 NA non-coding upstream 76623 32897427 ~ 32912129 (-)
G15272 NA non-coding upstream 85225 32906029 ~ 32908135 (-)
G15276 NA non-coding upstream 91425 32912229 ~ 32913566 (-)
G15289 NA non-coding upstream 150733 32971537 ~ 32983360 (-)
G15300 NA non-coding upstream 192566 33013370 ~ 33023936 (-)
nfkb1 nfkb1,LOC106536450 other downstream 654085 32122222 ~ 32159963 (-)
G14839 NA other downstream 1758545 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 1889961 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 1890799 30914910 ~ 30923249 (-)
LOC103045124 NA other downstream 1921400 30889606 ~ 30892648 (-)
G15497 NA other upstream 1313788 34134592 ~ 34136732 (-)
evc2 NA other upstream 1331019 34151823 ~ 34172017 (-)
G15498 NA other upstream 1420522 34241326 ~ 34242318 (-)

Expression


Co-expression Network