G15273


Basic Information

Item Value
gene id G15273
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32897427 ~ 32912129 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU20563
agaagaagaagaagaagcagaagaagaagaggaagaagaagaaaaggcaTAATCCAGTGGTATGAGGTAAGAGAGGGACGTTACATCATCAAACAGAACCTTTCAGaaccaaaatataataaaagctttATGATCTGCAGAACGTGGAGCGAAGCCAGGAGaatatgaaacacagagagcatgaggaaacacacacacacacacacacacacacacacacacagtttggcTGAAGCCCCGTTTACGCTAATTTATGGAAGATGGACCCGAGCGAGGCGCTGctgataattattataatttaatattcagattttttggcGCTGAGAAACAAACAGTGCTGAAATTCATCCACCAGCTACAACATCAACCATTAATACAAATATGTAGTGGCCACATTTTAATAAAGGATGATTTCATGGTCATGACTTAATTAATTATCTCACAACTTTTTAATCTCATTCttactaaactgaaactaagTTAAGTCATGGCCATGTTTACCTCAGTTTACCTTTAGTTGTggccacacatttttttttacatcaccaCAACTTACTACCATTTGTAAGTGCGtgtacagacaaaaaaaaacgtgagTATGCGGGCGTGGAagatattatatgttatatgttatatctGGTCCAATCACCAGCACTATGAAAAAATCTCAATTTTGCaaatttgtccaaaaaaaagtattttacaccAAAACCACTTTGCACGATTGTTCACATTTGAGTCTATTAATTATGTAAGAAAAGTTGGTAAACTTCccctttaattatatatatccAGCTTCTGAACTTCTAAATCCCTGAGGTTCTTCTGAAACAGCCACTGGggatctctcacacacacacacacgcacacacacacatatatAAACCAGACACAAATGGCACTGTGACTATGGCTACATCTATGTGTATCTGCAGTATAAAGAGATAATAGGGTTTAATAGAGGCTCTGTTCAGAGTTTCCCCTCACTCagacgcagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaatgaagggatggagaaagaaaaaaagaaagaaagaaagaggaaacgAGAGAGAATTGCATTGAGGATCTTTATCTTTGAGGTTCGAACTCTGAATCTCAGCTGAACTACAGCCGGTCTGTTAACAGGTagatttctgagAGCCGTGTCTCCAGAGGTATACTGTTCCCCCGCTTCAGGAACGTGGAGGAACCTGACGAGGGGCTACTGAGGCAGGTCGGTTCTGGTGGTGAAGTGGCTCGTGATGGTGAGTTGCTTGTGGTGGTCTCTACGCAGCACAGCGATGCTAATTAACAGTGCATAGCTCTAGGGCTGGCTTTAACAACACTGGAGAAACTTTCAGGCAAATTTAATccaataaaacatgttaaaaaacaaaaaaaaatatatacaatgtgtAAAACTCCCTCTGAAAATCACTCGAAACTTGCAAAGAGTGACAGAATACAATCaaacatcatttaaaacaattttgggCATGAAGCTAATAAAGCAGATAAAGCTAAAAAATATTCAGTTGTTTTTCTGACcgataataattttaataaccattaaaaaattaacagaCAATGCCAGAAGGAagtcagctaatgctaacagttgGTATCAACCAGCTAACACCAGTTTGTAACATTAAATAggcagctaatgctagcagTGGGTAACAGTAGGTataggctaatgctaacagatGGTCAAAATTGGTAGCCATCTAATGCTAACAGTTGATAACAGTAGGTATACATGTATGCTAATATTTGTAACATGTAGTagccagctaatgctaacagtagACATCTAATGATTCAGTTTTTAGCCAGCTAATGTTTGTAGTTTTGGTAGCCAGCTATCACCGGTAGACACTAGATAGTCTGCCAATGCTACCAGTTGTTAACATGTGGTAGCCAGCAAATGCTAACAGTTGGTAACGGGAGGTTAGGTagcaagctaatgctagcagttGGCGAGAGGTGACAGGTGGTAGTCAGCTAATGTTTGTAGGTTTTGAAGGTAGCCAGCTAACACCAACTGGTAACATAGGGCagtcagctaatgctaacagttgATAACAGAAGAtagaatgctaatgctaatgtttgtAACATGTGGTagccagctaatgctaacagttgACATCTATTGATTCAGTTGTTAGCCAGCTAATGTTGGTAGACAGCTAACACCAATTGGTAACAGTAGATAATAGGCAGCTACTGCTTGGTACCTGGTGGTAACAGTTGGTAACAGcaatttgagtaaaaagacCTAGCAAAATACCCTTAATTTAGGAGAAAACACCACATTAAATGTAGGTTTGCCAAtatttctgtgtgtataaagaTTTTTAGCGTTAAAATTcaggtggttggtgtggtgcagtggataacaccactgcctgcaAGTGAGCTACCAtatgggagactggggttcaagtCCAGGTCTGAGTGACTGAAtgctgct
>TU20564
agaagaagaagaagaagcagaagaagaagaggaagaagaagaaaaggcaTAATCCAGTGGTATGAGGTAAGAGAGGGACGTTACATCATCAAACAGAACCTTTCAGaaccaaaatataataaaagctttATGATCTGCAGAACGTGGAGCGAAGCCAGGAGaatatgaaacacagagagcatgaggaaacacacacacacacacacacacacctcacacacacacacacacacacacacacacacacatacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU20563 True 2527 lncRNA 0.37 4 32909381 32912129
TU20564 False 254 lncRNA 0.42 2 32897427 32912129

Neighbor

gene id symbol gene type direction distance location
LOC103029668 NA coding downstream 32090 32860683 ~ 32865337 (-)
LOC103039156 sec24b,LOC108434542,LOC107596339,LOC107731363,LOC107662171,LOC107704651 coding downstream 39132 32834496 ~ 32858295 (-)
LOC103031569 NA coding downstream 146662 32734285 ~ 32750765 (-)
rest NA coding downstream 238777 32649063 ~ 32658650 (-)
polr2b polr2b,LOC102791558 coding downstream 258509 32622181 ~ 32638918 (-)
LOC103029347 NA coding upstream 8896 32921025 ~ 32943593 (-)
LOC103028197 NA coding upstream 44002 32956131 ~ 32959840 (-)
LOC103027351 LOC108434533,LOC105893001 coding upstream 123720 33035849 ~ 33073381 (-)
kiaa0141 NA coding upstream 163004 33075133 ~ 33084176 (-)
nudt6 nudt6,LOC107690594 coding upstream 180736 33092865 ~ 33101606 (-)
G15249 NA non-coding downstream 101597 32795378 ~ 32795830 (-)
G15244 srp72,LOC107662169,LOC107552350,LOC107731365 non-coding downstream 103085 32784189 ~ 32794342 (-)
LOC103032939 NA non-coding downstream 130862 32766097 ~ 32766565 (-)
G15233 NA non-coding downstream 180529 32716630 ~ 32716898 (-)
G15217 NA non-coding downstream 198459 32612881 ~ 32698968 (-)
G15276 NA non-coding upstream 100 32912229 ~ 32913566 (-)
G15289 NA non-coding upstream 59408 32971537 ~ 32983360 (-)
G15300 NA non-coding upstream 101241 33013370 ~ 33023936 (-)
G15302 NA non-coding upstream 104136 33016265 ~ 33018552 (-)
G15303 NA non-coding upstream 106983 33019112 ~ 33040395 (-)
hopx hopx,LOC107552340 other downstream 76623 32814048 ~ 32820804 (-)
nfkb1 nfkb1,LOC106536450 other downstream 737464 32122222 ~ 32159963 (-)
G14839 NA other downstream 1841924 31053764 ~ 31055503 (-)
trnap-agg_1 NA other downstream 1973340 30923812 ~ 30924087 (-)
G14781 LOC107602351 other downstream 1974178 30914910 ~ 30923249 (-)
G15497 NA other upstream 1222463 34134592 ~ 34136732 (-)
evc2 NA other upstream 1239694 34151823 ~ 34172017 (-)
G15498 NA other upstream 1329197 34241326 ~ 34242318 (-)

Expression


Co-expression Network